Evidence map›Paper›PMID 37337101›Full record

ArticleInsights into imaging2023

Anatomically guided self-adapting deep neural network for clinically significant prostate cancer detection on bi-parametric MRI: a multi-center study.

Ahmet Karagoz, Deniz Alis, Mustafa Ege Seker, Gokberk Zeybel, Mert Yergin, Ilkay Oksuz, Ercan Karaarslan

Open access · goldAbstract read
In one paragraph

Article in Insights into imaging, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ahmet KaragozDepartment of Computer Engineering, Istanbul Technical University, Istanbul, Turkey.
Deniz AlisArtificial Intelligence and Information Technologies, Hevi AI Health, Istanbul, Turkey. deniz.alis@acibadem.edu.tr.ORCID http://orcid.org/0000-0001-7664-5786
Mustafa Ege SekerSchool of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Gokberk ZeybelSchool of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Mert YerginArtificial Intelligence and Information Technologies, Hevi AI Health, Istanbul, Turkey.
Ilkay OksuzDepartment of Computer Engineering, Istanbul Technical University, Istanbul, Turkey.
Ercan KaraarslanDepartment of Radiology, School of Medicine, Acibadem Mehmet Ali Aydinlar University, Istanbul, Turkey.
Kent Hastanesi · TRIstanbul Technical University · TR

Funding

Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 118C353Türkiye Bilimsel ve Teknolojik Araştırma Kurumu 122E022
6 · The paper itself

Abstract

objectiveTo evaluate the effectiveness of a self-adapting deep network, trained on large-scale bi-parametric MRI data, in detecting clinically significant prostate cancer (csPCa) in external multi-center data from men of diverse demographics; to investigate the advantages of transfer learning.

methodsWe used two samples: (i) Publicly available multi-center and multi-vendor Prostate Imaging: Cancer AI (PI-CAI) training data, consisting of 1500 bi-parametric MRI scans, along with its unseen validation and testing samples; (ii) In-house multi-center testing and transfer learning data, comprising 1036 and 200 bi-parametric MRI scans. We trained a self-adapting 3D nnU-Net model using probabilistic prostate masks on the PI-CAI data and evaluated its performance on the hidden validation and testing samples and the in-house data with and without transfer learning. We used the area under the receiver operating characteristic (AUROC) curve to evaluate patient-level performance in detecting csPCa.

resultsThe PI-CAI training data had 425 scans with csPCa, while the in-house testing and fine-tuning data had 288 and 50 scans with csPCa, respectively. The nnU-Net model achieved an AUROC of 0.888 and 0.889 on the hidden validation and testing data. The model performed with an AUROC of 0.886 on the in-house testing data, with a slight decrease in performance to 0.870 using transfer learning.

conclusionsThe state-of-the-art deep learning method using prostate masks trained on large-scale bi-parametric MRI data provides high performance in detecting csPCa in internal and external testing data with different characteristics, demonstrating the robustness and generalizability of deep learning within and across datasets. CLINICAL RELEVANCE STATEMENT: A self-adapting deep network, utilizing prostate masks and trained on large-scale bi-parametric MRI data, is effective in accurately detecting clinically significant prostate cancer across diverse datasets, highlighting the potential of deep learning methods for improving prostate cancer detection in clinical practice.

Indexed as

Deep learningMagnetic resonance imagingProstate cancer

Identifiers

PMID37337101
PMCPMC10279591
OpenAlexW4381249902

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.