Evidence map›Paper›PMID 37337046›Full record

ArticleNature microbiology2023

A genetic system for Akkermansia muciniphila reveals a role for mucin foraging in gut colonization and host sterol biosynthesis gene expression.

Lauren E Davey, Per N Malkus, Max Villa, Lee Dolat, Zachary C Holmes, Jeff Letourneau, Eduard Ansaldo, Lawrence A David, Gregory M Barton, Raphael H Valdivia

Open access · greenAbstract read
In one paragraph

Article in Nature microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 87 papers.

0numbers the graph read from it
0cells of the map it votes in
87citing papers in PubMed
18.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

87 citing papers in PubMed, 123 citations in OpenAlex.

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  15. Unveiling the Molecular Repertoire ofJournal of microbiology and biotechnology · 2026
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  20. High stability of the genome ofMicrobiology spectrum · 2026
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27 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Lauren E DaveyDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA. laurendavey@uvic.ca.ORCID http://orcid.org/0000-0002-9541-485X
Per N MalkusDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Max VillaDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Lee DolatDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Zachary C HolmesDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.
Jeff LetourneauDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.ORCID http://orcid.org/0000-0002-5878-0914
Eduard AnsaldoDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-7128-3373
Lawrence A DavidDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA.ORCID http://orcid.org/0000-0002-3570-4767
Gregory M BartonDivision of Immunology and Pathogenesis, Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, CA, USA.
Raphael H ValdiviaDepartment of Molecular Genetics and Microbiology, Duke University, Durham, NC, USA. raphael.valdivia@duke.edu.ORCID http://orcid.org/0000-0003-0961-073X
Duke University · USUniversity of California, Berkeley · US

Funding

Personalizing prebiotic therapies that target human gut microbiotaR01DK116187 · NIDDK · DUKE UNIVERSITY · PI Lawrence Anthony David · 2018 to 2026
$3.7M
Mechanisms of mucin binding and acquisition by AkkermansiaR01AI142376 · NIAID · DUKE UNIVERSITY · PI Raphael H Valdivia · 2018 to 2026
$2.9M
Genetic analysis in an intractable gut microbeR21DK110496 · NIDDK · DUKE UNIVERSITY · PI VALDIVIA, RAPHAEL H · 2016 to 2017
$437k
NIAID NIH HHS R01 AI142376NIDDK NIH HHS R21 DK110496
6 · The paper itself

Abstract

Akkermansia muciniphila, a mucophilic member of the gut microbiota, protects its host against metabolic disorders. Because it is genetically intractable, the mechanisms underlying mucin metabolism, gut colonization and its impact on host physiology are not well understood. Here we developed and applied transposon mutagenesis to identify genes important for intestinal colonization and for the use of mucin. An analysis of transposon mutants indicated that de novo biosynthesis of amino acids was required for A. muciniphila growth on mucin medium and that many glycoside hydrolases are redundant. We observed that mucin degradation products accumulate in internal compartments within bacteria in a process that requires genes encoding pili and a periplasmic protein complex, which we term mucin utilization locus (MUL) genes. We determined that MUL genes were required for intestinal colonization in mice but only when competing with other microbes. In germ-free mice, MUL genes were required for A. muciniphila to repress genes important for cholesterol biosynthesis in the colon. Our genetic system for A. muciniphila provides an important tool with which to uncover molecular links between the metabolism of mucins, regulation of lipid homeostasis and potential probiotic activities.

Indexed as

IntestinesMucinsVerrucomicrobiaAkkermansiaAnimalsBacterial ProteinsDNA Transposable ElementsHost Microbial InteractionsIntracellular SpaceMiceMutagenesisSpecific Pathogen-Free OrganismsSterolsTranscription, GeneticBacterial ProteinsDNA Transposable ElementsMucinsSterols

Identifiers

PMID37337046
PMCPMC11741908
OpenAlexW4381189797

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.