Evidence map›Paper›PMID 37335498›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

Using ChromEvol to Determine the Mode of Chromosomal Evolution.

Marcial Escudero, Enrique Maguilla, José Ignacio Márquez-Corro, Santiago Martín-Bravo, Itay Mayrose, Anat Shafir, Lu Tan, Carrie Tribble, Rosana Zenil-Ferguson

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marcial EscuderoDepartment of Plant Biology and Ecology, University of Seville, Seville, Spain.
Enrique MaguillaDepartment of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain.
José Ignacio Márquez-CorroDepartment of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain.
Santiago Martín-BravoDepartment of Molecular Biology and Biochemical Engineering, Universidad Pablo de Olavide, Seville, Spain.
Itay MayroseSchool of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel.
Anat ShafirSchool of Plant Sciences and Food Security, The George S. Wise Faculty of Life Sciences, Tel-Aviv University, Tel-Aviv, Israel.
Lu TanPanxi Crops Research and Utilization Key Laboratory of Sichuan Province, Xichang University, Xichang, China.
Carrie TribbleSchool of Life Sciences, University of Hawai`i at Mānoa, Honolulu, HI, USA.
Rosana Zenil-FergusonDepartment of Biology, University of Kentucky, Lexington, KY, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ChromEvol software was the first to implement a likelihood-based approach, using probabilistic models that depict the pattern of chromosome number change along a specified phylogeny. The initial models have been completed and expanded during the last years. New parameters that model polyploid chromosome evolution have been implemented in ChromEvol v.2. In recent years, new and more complex models have been developed. The BiChrom model is able to implement two distinct chromosome models for the two possible trait states of a binary character of interest. ChromoSSE jointly implements chromosome evolution, speciation, and extinction. In the near future, we will be able to study chromosome evolution with increasingly complex models.

Indexed as

ChromosomesEvolution, MolecularHumansLikelihood FunctionsPhylogenyPolyploidyBiChromChromEvolChromoPlusChromosome countChromoSSEDysploidyPhylogenyPolyploidyProbabilistic model

Identifiers

PMID37335498

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.