Evidence map›Paper›PMID 37335468›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2023

The Use of Flow Cytometry for Estimating Genome Sizes and DNA Ploidy Levels in Plants.

João Loureiro, Martin Čertner, Magdalena Lučanová, Elwira Sliwinska, Filip Kolář, Jaroslav Doležel, Sònia Garcia, Sílvia Castro, David W Galbraith

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Nuclear genome profiling of two species ofNAR genomics and bioinformatics · 2026
    Article
  3. Article
  4. Article
  5. Article
  6. Genome Size in thePlants (Basel, Switzerland) · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

João LoureiroCentre for Functional Ecology, Department of Life Sciences, University of Coimbra, Coimbra, Portugal. jloureiro@bot.uc.pt.
Martin ČertnerDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.
Magdalena LučanováCzech Academy of Sciences, Institute of Botany, Průhonice, Czech Republic.
Elwira SliwinskaLaboratory of Molecular Biology and Cytometry, Department of Agricultural Biotechnology, Bydgoszcz University of Science and Technology, Bydgoszcz, Poland.
Filip KolářDepartment of Botany, Faculty of Science, Charles University, Prague, Czech Republic.
Jaroslav DoleželInstitute of Experimental Botany of the Czech Academy of Sciences, Centre of Plant Structural and Functional Genomics, Olomouc, Czech Republic.
Sònia GarciaInstitut Botànic de Barcelona (IBB-CSIC, Ajuntament de Barcelona), Barcelona, Catalonia, Spain.
Sílvia CastroCentre for Functional Ecology, Department of Life Sciences, University of Coimbra, Coimbra, Portugal.
David W GalbraithSchool of Plant Sciences, BIO5 Institute, Arizona Cancer Center, Department of Biomedical Engineering, University of Arizona, Tucson, AZ, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Flow cytometry has emerged as a uniquely flexible, accurate, and widely applicable technology for the analysis of plant cells. One of its most important applications centers on the measurement of nuclear DNA contents. This chapter describes the essential features of this measurement, outlining the overall methods and strategies, but going on to provide a wealth of technical details to ensure the most accurate and reproducible results. The chapter is aimed to be equally accessible to experienced plant cytometrists as well as those newly entering the field. Besides providing a step-by-step guide for estimating genome sizes and DNA-ploidy levels from fresh tissues, special attention is paid to the use of seeds and desiccated tissues for such purposes. Methodological aspects regarding field sampling, transport, and storage of plant material are also given in detail. Finally, troubleshooting information for the most common problems that may arise during the application of these methods is provided.

Indexed as

Cell NucleusPlantsDNA, PlantFlow CytometryGenome, PlantGenome SizePloidiesDNA, PlantBest practicesDAPIDesiccated tissuesDNA-ploidy levelFlow cytometryGenome sizePlant nuclei isolationPlant tissuesPropidium iodideSeeds

Identifiers

PMID37335468

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.