Evidence map›Paper›PMID 37333096›Full record

ArticlebioRxiv : the preprint server for biology2023

Alteration of DNMT1/DNMT3A by eribulin elicits global DNA methylation changes with potential therapeutic implications for triple-negative breast cancer.

Meisam Bagheri, Min Kyung Lee, Kristen E Muller, Todd W Miller, Diwakar R Pattabiraman, Brock C Christensen

Open access · greenAbstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Meisam BagheriDepartment of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03766.
Min Kyung LeeDepartment of Epidemiology, Geisel School of Medicine at Dartmouth, Lebanon, NH, 03756.
Kristen E MullerDartmouth Cancer Center, Lebanon, NH, 03756.
Todd W MillerDepartment of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03766.
Diwakar R PattabiramanDepartment of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03766.
Brock C ChristensenDepartment of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Lebanon, NH 03766.
Dartmouth College · US

Funding

Translational Engineering in Cancer (TEC)P30CA023108 · NCI · DARTMOUTH COLLEGE · PI Fred W Kolling IV · 1985 to 2026
$91.3M
Zhao - Proj 2P20GM130454 · NIGMS · DARTMOUTH COLLEGE · PI MICHAEL L WHITFIELD · 2019 to 2026
$27.2M
(PQ3) Immune epigenetic biomarkers of bladder cancer outcomesR01CA216265 · NCI · DARTMOUTH COLLEGE · PI CHRISTENSEN, BROCK CLARKE · 2017 to 2021
$2.9M
Uncovering the basis and implications of lineage plasticity in breast cancerR01CA267691 · NCI · MEDICAL COLLEGE OF WISCONSIN · PI Todd W. Miller · 2022 to 2026
$1.8M
Defining human kinase-substrate networks and their dynamic regulationR01GM122846 · NIGMS · DARTMOUTH COLLEGE · PI GERBER, SCOTT A. · 2017 to 2020
$1.5M
Exploiting the epithelial-to-mesenchymal transition for the differentiation of cancer stem cellsR00CA201574 · NCI · DARTMOUTH COLLEGE · PI PATTABIRAMAN, DIWAKAR R · 2018 to 2020
$686k
10X Genomics Chromium Single-cell Sequencing to Expand Research At DartmouthS10OD025235 · OD · DARTMOUTH COLLEGE · PI TOMLINSON, CRAIG R · 2018 to 2018
$125k
NCI NIH HHS P30 CA023108NCI NIH HHS R00 CA201574NCI NIH HHS R01 CA216265NCI NIH HHS R01 CA267691NIGMS NIH HHS P20 GM130454NIGMS NIH HHS R01 GM122846NIH HHS S10 OD025235
6 · The paper itself

Abstract

Triple-negative breast cancer (TNBC) is an aggressive disease subtype with limited treatment options. Eribulin is a chemotherapeutic approved for the treatment of advanced breast cancer that has been shown to elicit epigenetic changes. We investigated the effect of eribulin treatment on genome-scale DNA methylation patterns in TNBC cells. Following repeated treatment, The results showed that eribulin-induced changes in DNA methylation patterns evident in persister cells. Eribulin also affected the binding of transcription factors to genomic ZEB1 binding sites and regulated several cellular pathways, including ERBB and VEGF signaling and cell adhesion. Eribulin also altered the expression of epigenetic modifiers including DNMT1, TET1, and DNMT3A/B in persister cells. Data from primary human TNBC tumors supported these findings: DNMT1 and DNMT3A levels were altered by eribulin treatment in human primary TNBC tumors. Our results suggest that eribulin modulates DNA methylation patterns in TNBC cells by altering the expression of epigenetic modifiers. These findings have clinical implications for using eribulin as a therapeutic agent.

Indexed as

DNA methylationDNMT1/DNMT3AEpithelial-to-mesenchymal transitionmesenchymal-to-epithelial transition

Identifiers

PMID37333096
PMCPMC10274899
OpenAlexW4380270913

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.