Evidence map›Paper›PMID 37330911›Full record

ArticleCell reports2023

ETV2 primes hematoendothelial gene enhancers prior to hematoendothelial fate commitment.

Jeffrey D Steimle, Chul Kim, Megan Rowton, Rangarajan D Nadadur, Zhezhen Wang, Matthew Stocker, Andrew D Hoffmann, Erika Hanson, Junghun Kweon, Tanvi Sinha and 5 more

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Jeffrey D SteimleDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Chul KimDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA; Department of Pediatrics, Section of Hematology/Oncology, University of Chicago, Chicago, IL 60637, USA.
Megan RowtonDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Rangarajan D NadadurDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Zhezhen WangDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Matthew StockerDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Andrew D HoffmannDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Erika HansonDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Junghun KweonDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA.
Tanvi SinhaCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA 94143, USA.
Kyunghee ChoiDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110, USA.
Brian L BlackCardiovascular Research Institute, University of California, San Francisco, San Francisco, CA 94143, USA; Department of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, CA 94143, USA.
John M CunninghamDepartment of Pediatrics, Section of Hematology/Oncology, University of Chicago, Chicago, IL 60637, USA.
Ivan P MoskowitzDepartments of Pediatrics, Pathology, and Human Genetics, University of Chicago, Chicago, IL 60637, USA. Electronic address: imoskowitz@uchicago.edu.
Kohta IkegamiDivision of Molecular and Cardiovascular Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA; Department of Pediatrics, University of Cincinnati, Cincinnati, OH 45229, USA. Electronic address: kohta.ikegami@cchmc.org.
University of Chicago · USUniversity of California, San Francisco · USCincinnati Children's Hospital Medical Center · USWashington University in St. Louis · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
PREDOCTORAL TRAINING IN GENETICS AND REGULATIONT32GM007197 · NIGMS · UNIVERSITY OF CHICAGO · PI ROTHMAN-DENES, LUCIA B. B · 1985 to 2020
$17.0M
Project 3: Control of cardiac transcription by MEF2 and myocardinP01HL146366 · NHLBI · J. DAVID GLADSTONE INSTITUTES · PI CONKLIN, BRUCE R · 2019 to 2023
$13.7M
MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
Hemangioglast Development and RegulationR01HL055337 · NHLBI · WASHINGTON UNIVERSITY · PI CHOI, KYUNGHEE · 2001 to 2024
$9.1M
Trisomy 21 and its impact on hedgehog-dependent gene regulation and differentiation timingR01HD111938 · NICHD · UNIVERSITY OF CHICAGO · PI Ivan Paul Moskowitz · 2023 to 2026
$6.7M
Discovery and interrogation of genetic regulatory variation impacting Atrial Fibrillation riskR01HL163523 · NHLBI · UNIVERSITY OF CHICAGO · PI HE, XIN, MOSKOWITZ, IVAN PAUL · 2022 to 2025
$3.1M
Research Training Program in Cardiovascular SurgeryT32HL139430 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI Todd K Rosengart · 2018 to 2026
$2.9M
The molecular basis of cardiac differentiation controlR01HL147571 · NHLBI · UNIVERSITY OF CHICAGO · PI MOSKOWITZ, IVAN PAUL · 2019 to 2023
$2.8M
Mechanisms in Lamin A function in gene regulationR33AG054770 · NIA · UNIVERSITY OF CHICAGO · PI IKEGAMI, KOHTA · 2019 to 2021
$1.6M
The role of the sub-endothelial niche in hemogenic endothelial specificationR01DK119621 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI BLACK, BRIAN L · 2019 to 2021
$870k
Single-cell and single-molecule profiling of protein-DNA interactions by MACHAR21HG012423 · NHGRI · UNIVERSITY OF CHICAGO · PI IKEGAMI, KOHTA, POTT, SEBASTIAN · 2022 to 2023
$462k
American Heart Association-American Stroke Association 16POST30740016NHGRI NIH HHS R21 HG012423NHLBI NIH HHS F30 HL131298NHLBI NIH HHS F32 HL156465NHLBI NIH HHS P01 HL146366NHLBI NIH HHS R01 HL055337NHLBI NIH HHS R01 HL147571NHLBI NIH HHS R01 HL163523NHLBI NIH HHS T32 HL007381NHLBI NIH HHS T32 HL139430NIA NIH HHS R21 AG054770NIA NIH HHS R33 AG054770NICHD NIH HHS R01 HD111938NIDDK NIH HHS R01 DK119621NIGMS NIH HHS T32 GM007183NIGMS NIH HHS T32 GM007197
6 · The paper itself

Abstract

Mechanisms underlying distinct specification, commitment, and differentiation phases of cell fate determination remain undefined due to difficulties capturing these processes. Here, we interrogate the activity of ETV2, a transcription factor necessary and sufficient for hematoendothelial differentiation, within isolated fate intermediates. We observe transcriptional upregulation of Etv2 and opening of ETV2-binding sites, indicating new ETV2 binding, in a common cardiac-hematoendothelial progenitor population. Accessible ETV2-binding sites are active at the Etv2 locus but not at other hematoendothelial regulator genes. Hematoendothelial commitment coincides with the activation of a small repertoire of previously accessible ETV2-binding sites at hematoendothelial regulators. Hematoendothelial differentiation accompanies activation of a large repertoire of new ETV2-binding sites and upregulation of hematopoietic and endothelial gene regulatory networks. This work distinguishes specification, commitment, and sublineage differentiation phases of ETV2-dependent transcription and suggests that the shift from ETV2 binding to ETV2-bound enhancer activation, not ETV2 binding to target enhancers, drives hematoendothelial fate commitment.

Indexed as

Hematopoietic Stem CellsTranscription FactorsCell DifferentiationEndotheliumGene Expression Regulation, DevelopmentalRegulatory Sequences, Nucleic AcidETV2 protein, humanTranscription Factorscell fatecommitmentCP: Molecular biologyCP: Stem cell researchdifferentiationendothelial developmentETV2hematoendotheliumhematopoiesispioneer factorstranscriptional regulationVEGF

Identifiers

PMID37330911
PMCPMC10592526
OpenAlexW4381094144

What OpenQuestion holds

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LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.