Evidence map›Paper›PMID 37329506›Full record

ArticleAngewandte Chemie (International ed. in English)2023

Infrared Multiphoton Dissociation Enables Top-Down Characterization of Membrane Protein Complexes and G Protein-Coupled Receptors.

Corinne A Lutomski, Tarick J El-Baba, Joshua D Hinkle, Idlir Liko, Jack L Bennett, Neha V Kalmankar, Andrew Dolan, Carla Kirschbaum, Kim Greis, Leonhard H Urner and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Angewandte Chemie (International ed. in English), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
4.6field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Analytical applications of gas-phase ion chemistry enabled by mass spectrometry.Analytical methods : advancing methods and applications · 2026
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. A Conformation-Specific Approach to Native Top-down Mass Spectrometry.Journal of the American Society for Mass Spectrometry · 2024
    Article
  17. Article
  18. Revealing the Fates of Proteins in the Gas Phase.International journal of mass spectrometry · 2024
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 4 countries.

Corinne A LutomskiPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.
Tarick J El-BabaPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.
Joshua D HinkleThermo Fisher Scientific, San Jose, CA 95134, USA.
Idlir LikoOMass Therapeutics, Oxford, OX4 2GX, UK.
Jack L BennettPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.
Neha V KalmankarPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.
Andrew DolanPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.
Carla KirschbaumInstitute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.
Kim GreisInstitute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.
Leonhard H UrnerInstitute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.
Parth KapoorOMass Therapeutics, Oxford, OX4 2GX, UK.
Hsin-Yung YenOMass Therapeutics, Oxford, OX4 2GX, UK.
Kevin PagelInstitute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, 14195, Germany.
Christopher MullenThermo Fisher Scientific, San Jose, CA 95134, USA.
John E P SykaThermo Fisher Scientific, San Jose, CA 95134, USA.
Carol V RobinsonPhysical and Theoretical Chemistry Laboratory, Department of Chemistry, University of Oxford, Oxford, OX1 3QU, UK.ORCID 0000-0001-7829-5505
University of Oxford · GBFritz Haber Institute of the Max Planck Society · DEThermo Fisher Scientific (United States) · USPsiOxus Therapeutics (United Kingdom) · GBInstitute of Biological Chemistry, Academia Sinica · TWTU Dortmund University · DE

Funding

TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Medical Research Council MR/V028839/1NIGMS NIH HHS P41 GM108538Wellcome Trust 221795Wellcome Trust 221795/Z/20/Z
6 · The paper itself

Abstract

Membrane proteins are challenging to analyze by native mass spectrometry (MS) as their hydrophobic nature typically requires stabilization in detergent micelles that are removed prior to analysis via collisional activation. There is however a practical limit to the amount of energy which can be applied, which often precludes subsequent characterization by top-down MS. To overcome this barrier, we have applied a modified Orbitrap Eclipse Tribrid mass spectrometer coupled to an infrared laser within a high-pressure linear ion trap. We show how tuning the intensity and time of incident photons enables liberation of membrane proteins from detergent micelles. Specifically, we relate the ease of micelle removal to the infrared absorption of detergents in both condensed and gas phases. Top-down MS via infrared multiphoton dissociation (IRMPD), results in good sequence coverage enabling unambiguous identification of membrane proteins and their complexes. By contrasting and comparing the fragmentation patterns of the ammonia channel with two class A GPCRs, we identify successive cleavage of adjacent amino acids within transmembrane domains. Using gas-phase molecular dynamics simulations, we show that areas prone to fragmentation maintain aspects of protein structure at increasing temperatures. Altogether, we propose a rationale to explain why and where in the protein fragment ions are generated.

Indexed as

DetergentsMicellesMass SpectrometryMembrane ProteinsReceptors, G-Protein-CoupledDetergentsMembrane ProteinsMicellesReceptors, G-Protein-CoupledInfrared Multiphoton DissociationMass SpectrometryMembrane ProteinsTandem Mass Spectrometry

Identifiers

PMID37329506
PMCPMC7615181
OpenAlexW4381054504

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.