Evidence map›Paper›PMID 37328946›Full record

ArticleGenes, brain, and behavior2023

Spontaneous allelic variant in deafness-blindness gene Ush1g resulting in an expanded phenotype.

Vladimir Vartanian, Jocelyn F Krey, Paroma Chatterjee, Allison Curtis, Makayla Six, Sean P M Rice, Sherri M Jones, Harini Sampath, Charles N Allen, Renee C Ryals and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Genes, brain, and behavior, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Vladimir VartanianOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon, USA.
Jocelyn F KreyOregon Hearing Research Center and Vollum Institute, Oregon Health & Science University, Portland, Oregon, USA.
Paroma ChatterjeeOregon Hearing Research Center and Vollum Institute, Oregon Health & Science University, Portland, Oregon, USA.
Allison CurtisDepartment of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, Oregon, USA.
Makayla SixDepartment of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, Oregon, USA.
Sean P M RiceOregon Institute of Occupational Health Sciences and School of Public Health, Oregon Health & Science University-Portland State University, Portland, Oregon, USA.
Sherri M JonesDepartment of Special Education and Communication Disorders, University of Nebraska-Lincoln, Lincoln, Nebraska, USA.
Harini SampathDepartment of Nutritional Sciences and New Jersey Institute for Food, Nutrition, and Health, Rutgers University, New Brunswick, New Jersey, USA.
Charles N AllenOregon Institute of Occupational Health Sciences and Department of Behavioral Neuroscience, Oregon Health & Science University, Portland, Oregon, USA.
Renee C RyalsDepartment of Ophthalmology, Casey Eye Institute, Oregon Health & Science University, Portland, Oregon, USA.
R Stephen LloydOregon Institute of Occupational Health Sciences, Oregon Health & Science University, Portland, Oregon, USA.
Peter G Barr-GillespieOregon Hearing Research Center and Vollum Institute, Oregon Health & Science University, Portland, Oregon, USA.ORCID 0000-0002-9787-5860
Oregon Health & Science University · USPortland State University · USRutgers, The State University of New Jersey · USUniversity of Nebraska–Lincoln · US

Funding

Proteomics CoreP30EY010572 · NEI · OREGON HEALTH & SCIENCE UNIVERSITY · PI John Peter Campbell · 1995 to 2026
$19.4M
Hair-Bundle ProteinsR01DC002368 · NIDCD · OREGON HEALTH & SCIENCE UNIVERSITY · PI Peter Gordon Barr-Gillespie · 1994 to 2026
$11.3M
Mechanisms of GABAergic Signaling in the Suprachiasmatic Nucleus NetworkR01NS103842 · NINDS · OREGON HEALTH & SCIENCE UNIVERSITY · PI ALLEN, CHARLES N · 2018 to 2025
$4.0M
Role of Base Excision Repair in Limiting Hepatocellular Carcinomas -Administrative SupplementR01ES031086 · NIEHS · OREGON HEALTH & SCIENCE UNIVERSITY · PI LLOYD, R. STEPHEN · 2020 to 2024
$2.0M
NEI NIH HHS P30 EY010572NIDCD NIH HHS R01 DC002368NIEHS NIH HHS R01 ES031086NINDS NIH HHS R01 NS103842
6 · The paper itself

Abstract

Relationships between novel phenotypic behaviors and specific genetic alterations are often discovered using target-specific, directed mutagenesis or phenotypic selection following chemical mutagenesis. An alternative approach is to exploit deficiencies in DNA repair pathways that maintain genetic integrity in response to spontaneously induced damage. Mice deficient in the DNA glycosylase NEIL1 show elevated spontaneous mutations, which arise from translesion DNA synthesis past oxidatively induced base damage. Several litters of Neil1 knockout mice included animals that were distinguished by their backwards-walking behavior in open-field environments, while maintaining frantic forward movements in their home cage environment. Other phenotypic manifestations included swim test failures, head tilting and circling. Mapping of the mutation that conferred these behaviors showed the introduction of a stop codon at amino acid 4 of the Ush1g gene. Ush1g

Indexed as

DNA GlycosylasesUsher SyndromesAllelesAnimalsMiceMutationPhenotypeDNA GlycosylasesNeil1 protein, mousebackward walking mousecochleaDNA repairhair cellhyperactivityretinastereocilia

Identifiers

PMID37328946
PMCPMC10393423
OpenAlexW4381046889

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.