Evidence map›Paper›PMID 37326803›Full record

ArticleCellular oncology (Dordrecht, Netherlands)2023

Competition between p53 and YY1 determines PHGDH expression and malignancy in bladder cancer.

Tiezhu Shi, Zhihao Yuan, Yanying He, Dongliang Zhang, Siteng Chen, Xiongjun Wang, Linli Yao, Jialiang Shao, Xiang Wang

Abstract read
In one paragraph

Article in Cellular oncology (Dordrecht, Netherlands), 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. The role and mechanism of human papillomavirus in urinary system tumors.The Journal of international medical research · 2025
    Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Tiezhu Shi *Precise Genome Engineering Centre, School of Life Sciences, Guangzhou University, 510006, Guangzhou, China.
Zhihao Yuan *Department of Urology, Shanghai General Hospital, Shanghai Jiaotong University, 200080, Shanghai, China.
Yanying He *Precise Genome Engineering Centre, School of Life Sciences, Guangzhou University, 510006, Guangzhou, China.
Dongliang ZhangDepartment of Urology, Shanghai General Hospital, Shanghai Jiaotong University, 200080, Shanghai, China.
Siteng ChenDepartment of Urology, Shanghai General Hospital, Shanghai Jiaotong University, 200080, Shanghai, China.
Xiongjun WangPrecise Genome Engineering Centre, School of Life Sciences, Guangzhou University, 510006, Guangzhou, China.
Linli YaoState Key Laboratory of Systems Medicine for Cancer, Shanghai Cancer Institute, Ren Ji Hospital, Shanghai Jiaotong University School of Medicine, 200080, Shanghai, China. llyao@shsci.org.
Jialiang ShaoDepartment of Urology, Shanghai General Hospital, Shanghai Jiaotong University, 200080, Shanghai, China. alexshaojialiang@126.com.
Xiang WangDepartment of Urology, Shanghai General Hospital, Shanghai Jiaotong University, 200080, Shanghai, China. drseanwang@163.com.
Shanghai First People's Hospital · CNGuangzhou University · CNShanghai Cancer Institute · CN

Funding

National Natural Science Foundation for Young Scholars of China 81902566National Natural Science Foundation of China 82172920Shanghai Jiaotong University Medical-Engineering Cross Research Fund YG2019QNA53
6 · The paper itself

Abstract

purposeSerine metabolism is frequently dysregulated in many types of cancers and the tumor suppressor p53 is recently emerging as a key regulator of serine metabolism. However, the detailed mechanism remains unknown. Here, we investigate the role and underlying mechanisms of how p53 regulates the serine synthesis pathway (SSP) in bladder cancer (BLCA).

methodsTwo BLCA cell lines RT-4 (WT p53) and RT-112 (p53 R248Q) were manipulated by applying CRISPR/Cas9 to examine metabolic differences under WT and mutant p53 status. Liquid chromatography-tandem mass spectrometry (LC-MS/MS) and non-targeted metabolomics analysis were adopted to identify metabolomes changes between WT and p53 mutant BLCA cells. Bioinformatics analysis using the cancer genome atlas and Gene Expression Omnibus datasets and immunohistochemistry (IHC) staining was used to investigate PHGDH expression. Loss-of-function of PHGDH and subcutaneous xenograft model was adopted to investigate the function of PHGDH in mice BLCA. Chromatin immunoprecipitation (Ch-IP) assay was performed to analyze the relationships between YY1, p53, SIRT1 and PHGDH expression.

resultsSSP is one of the most prominent dysregulated metabolic pathways by comparing the metabolomes changes between wild-type (WT) p53 and mutant p53 of BLCA cells. TP53 gene mutation shows a positive correlation with PHGDH expression in TCGA-BLCA database. PHGDH depletion disturbs the reactive oxygen species homeostasis and attenuates the xenograft growth in the mouse model. Further, we demonstrate WT p53 inhibits PHGDH expression by recruiting SIRT1 to the PHGDH promoter. Interestingly, the DNA binding motifs of YY1 and p53 in the PHGDH promoter are partially overlapped which causes competition between the two transcription factors. This competitive regulation of PHGDH is functionally linked to the xenograft growth in mice.

conclusionYY1 drives PHGDH expression in the context of mutant p53 and promotes bladder tumorigenesis, which preliminarily explains the relationship between high-frequency mutations of p53 and dysfunctional serine metabolism in bladder cancer.

Indexed as

Tumor Suppressor Protein p53Urinary Bladder NeoplasmsAnimalsCell Line, TumorChromatography, LiquidGenes, p53HumansMiceSerineSirtuin 1Tandem Mass SpectrometryYY1 Transcription FactorSerineSirtuin 1Tumor Suppressor Protein p53YY1 protein, humanYY1 Transcription FactorBladder cancerp53 mutationPHGDHSerine metabolismYY1

Identifiers

PMID37326803
PMCPMC12974716
OpenAlexW4380872154

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.