Evidence map›Paper›PMID 37325659›Full record

ArticleFrontiers in immunology2023

HIV-1 activates oxidative phosphorylation in infected CD4 T cells in a human tonsil explant model.

Tracey L Freeman, Connie Zhao, Nadine Schrode, Trinisia Fortune, Sanjana Shroff, Benjamin Tweel, Kristin G Beaumont, Talia H Swartz

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Advances in Single-Cell Sequencing for Infectious Diseases: Progress and Perspectives.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Review
  4. Article
  5. Review
  6. Review
  7. Article
  8. Review
  9. Tonsil explants as a humanFrontiers in immunology · 2024
    Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Tracey L FreemanMedical Scientist Training Program, University of Pittsburgh-Carnegie Mellon University, Pittsburgh, PA, United States.
Connie ZhaoDepartment of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Nadine SchrodeDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Trinisia FortuneDivision of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Sanjana ShroffDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Benjamin TweelDepartment of Otolaryngology, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Kristin G BeaumontDepartment of Genetics and Genomic Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Talia H SwartzDivision of Infectious Diseases, Department of Medicine, Icahn School of Medicine at Mount Sinai, New York, NY, United States.
Icahn School of Medicine at Mount Sinai · USUniversity of Pittsburgh · US

Funding

Nicotine and NLRP3 Inflammasome in HIV-1-Associated CNS InflammationR01DA059876 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI Schahram Akbarian, BENJAMIN K CHEN · 2024 to 2026
$2.3M
Elucidating the mechanisms of cannabinoids on HIV-1 infection and inflammasome activationR01DA052255 · NIDA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SWARTZ, TALIA H · 2020 to 2024
$2.1M
Purinergic signaling in HIV-1 infection and inflammationK08AI120806 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SWARTZ, TALIA H · 2016 to 2020
$878k
Dissecting the mechanisms of HIV-1 infection and inflammatory signaling in human lymphoid tissueR21AI152833 · NIAID · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SWARTZ, TALIA H · 2020 to 2021
$466k
NIAID NIH HHS K08 AI120806NIAID NIH HHS R21 AI152833NIDA NIH HHS R01 DA052255NIDA NIH HHS R01 DA059876
6 · The paper itself

Abstract

Introduction: Human immunodeficiency virus type 1 (HIV-1) causes a chronic, incurable infection leading to immune activation and chronic inflammation in people with HIV-1 (PWH), even with virologic suppression on antiretroviral therapy (ART). The role of lymphoid structures as reservoirs for viral latency and immune activation has been implicated in chronic inflammation mechanisms. Still, the specific transcriptomic changes induced by HIV-1 infection in different cell types within lymphoid tissue remain unexplored. Methods: In this study, we utilized human tonsil explants from healthy human donors and infected them with HIV-1 Results: Our analysis revealed that infected CD4 Discussion: These findings provide valuable insights into the specific transcriptomic changes induced by HIV-1 infection in different cell types within lymphoid tissue. The activation of oxidative phosphorylation in infected CD4

Indexed as

HIV-1HIV InfectionsCD4-Positive T-LymphocytesHumansInflammationOxidative PhosphorylationPalatine Tonsilbystander cellsCD4 T cellHIV-1macrophagemetabolomicsNLRP3 inflammasomeoxidative phoshorylationsingle cell RNA sequencing (scRNA)

Identifiers

PMID37325659
PMCPMC10266353
OpenAlexW4378906403

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.