Evidence map›Paper›PMID 37324682›Full record

ArticleFrontiers in plant science2023

A bench-top Dark-Root device built with LEGO

Georgi Dermendjiev, Madeleine Schnurer, Ethan Stewart, Thomas Nägele, Giada Marino, Dario Leister, Alexandra Thür, Stefan Plott, Jakub Jeż, Verena Ibl

Open access · goldAbstract read
In one paragraph

Article in Frontiers in plant science, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
1.2field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 3 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Georgi DermendjievDepartment of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria.
Madeleine SchnurerDepartment of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria.
Ethan StewartPlant Sciences Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria.
Thomas NägeleFaculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.
Giada MarinoFaculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.
Dario LeisterFaculty of Biology, Plant Evolutionary Cell Biology Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany.
Alexandra ThürDepartment of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria.
Stefan PlottDepartment of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria.
Jakub JeżPlant Sciences Facility, Vienna Biocenter Core Facilities (VBCF), Vienna, Austria.
Verena IblDepartment of Functional and Evolutionary Ecology, Molecular Systems Biology (MoSys), University of Vienna, Vienna, Austria.
University of Vienna · ATLudwig-Maximilians-Universität München · DEVienna BioCenter Core Facilities · AT

Funding

Austrian Science Fund FWF DOC 111Austrian Science Fund FWF P 33891
6 · The paper itself

Abstract

Roots are the hidden parts of plants, anchoring their above-ground counterparts in the soil. They are responsible for water and nutrient uptake and for interacting with biotic and abiotic factors in the soil. The root system architecture (RSA) and its plasticity are crucial for resource acquisition and consequently correlate with plant performance while being highly dependent on the surrounding environment, such as soil properties and therefore environmental conditions. Thus, especially for crop plants and regarding agricultural challenges, it is essential to perform molecular and phenotypic analyses of the root system under conditions as near as possible to nature (#asnearaspossibletonature). To prevent root illumination during experimental procedures, which would heavily affect root development, Dark-Root (D-Root) devices (DRDs) have been developed. In this article, we describe the construction and different applications of a sustainable, affordable, flexible, and easy to assemble open-hardware bench-top LEGO® DRD, the DRD-BIBLOX (Brick Black Box). The DRD-BIBLOX consists of one or more 3D-printed rhizoboxes, which can be filled with soil while still providing root visibility. The rhizoboxes sit in a scaffold of secondhand LEGO® bricks, which allows root development in the dark and non-invasive root tracking with an infrared (IR) camera and an IR light-emitting diode (LED) cluster. Proteomic analyses confirmed significant effects of root illumination on barley root and shoot proteomes. Additionally, we confirmed the significant effect of root illumination on barley root and shoot phenotypes. Our data therefore reinforces the importance of the application of field conditions in the lab and the value of our novel device, the DRD-BIBLOX. We further provide a DRD-BIBLOX application spectrum, spanning from investigating a variety of plant species and soil conditions and simulating different environmental conditions and stresses, to proteomic and phenotypic analyses, including early root tracking in the dark.

Indexed as

#asnearaspossibletonaturebarleycropsD-RootLego®open-sourceroot system architectureroot tracking

Identifiers

PMID37324682
PMCPMC10264708
OpenAlexW4378907645

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.