Evidence map›Paper›PMID 37323558›Full record

ArticleBioinformation2022

Identification and annotation of milk associated genes from milk somatic cells using expression and RNA-seq data.

Neelam Krishna, Shraddha Vishwakarma, Pramod Katara

Abstract read
In one paragraph

Article in Bioinformation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Neelam KrishnaComputational Omics Lab, Centre of Bioinformatics, University of Allahabad, Prayagraj - 211002, India.
Shraddha VishwakarmaComputational Omics Lab, Centre of Bioinformatics, University of Allahabad, Prayagraj - 211002, India.
Pramod KataraComputational Omics Lab, Centre of Bioinformatics, University of Allahabad, Prayagraj - 211002, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

It is of interest to identify and annotate milk associated genes using expression profiling and RNA-Seq data from milk somatic cells. RNA-Seq data was pre-processed and mapping was done to identify differentially expressed genes (DEG). The functional insights about the up and down regulated genes were gleaned using the protein-protein interaction Network in the STRING database followed by CytoHubba analysis in Cytoscope. Gene ontology, annotation and pathway enrichment was completed using ShinyGO, David tool and QTL analysis. These analysis shows that 21 genes are linked with the secretion of milk.

Indexed as

CaseinGene expressionLactationMilk TraitsSomatic cell

Identifiers

PMID37323558
PMCPMC10266364

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.