Evidence map›Paper›PMID 37322474›Full record

ArticleBMC medical genomics2023

Single-cell RNA-sequencing of stria vascularis cells in the adult Slc26a4

Jin-Young Koh, Corentin Affortit, Paul T Ranum, Cody West, William D Walls, Hidekane Yoshimura, Jian Q Shao, Brian Mostaert, Richard J H Smith

Open access · goldAbstract read
In one paragraph

Article in BMC medical genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
3.1field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Frontiers in cell and developmental biology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Pharmacological Approaches to Hearing Loss.Pharmacological reviews · 2024
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Jin-Young KohRoy J. Carver Department of Biomedical Engineering, College of Engineering, University of Iowa, University of Iowa, Iowa City, IA, USA.
Corentin AffortitMolecular Otolaryngology and Renal Research Laboratories, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Paul T RanumMolecular Otolaryngology and Renal Research Laboratories, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Cody WestMolecular Otolaryngology and Renal Research Laboratories, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
William D WallsMolecular Otolaryngology and Renal Research Laboratories, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Hidekane YoshimuraMolecular Otolaryngology and Renal Research Laboratories, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Jian Q ShaoCentral Microscopy Research Facility, University of Iowa, Iowa City, IA, USA.
Brian MostaertDepartment of Otolaryngology, Head and Neck Surgery, Carver College of Medicine, University of Iowa, Iowa City, IA, USA.
Richard J H SmithRoy J. Carver Department of Biomedical Engineering, College of Engineering, University of Iowa, University of Iowa, Iowa City, IA, USA. richard-smith@uiowa.edu.
University of Iowa · USShinshu University · JP

Funding

NONSYNDROMIC HEARING LOSS--A COLLABORATIVE STUDYR01DC002842 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 1996 to 2024
$12.7M
Optimizing Genetic Testing for Deafness for Clinical DiagnosticsR01DC012049 · NIDCD · UNIVERSITY OF IOWA · PI TERRY A BRAUN, Thomas L. Casavant · 2011 to 2026
$8.7M
Autosomal Dominant Non-Syndromic Hearing Loss - Its Genetic Diagnosis and TreatmentR01DC017955 · NIDCD · UNIVERSITY OF IOWA · PI SMITH, RICHARD J.H. · 2019 to 2023
$2.6M
NIDCD NIH HHS R01 DC002842NIDCD NIH HHS R01 DC012049NIDCD NIH HHS R01 DC017955
6 · The paper itself

Abstract

backgroundThe primary pathological alterations of Pendred syndrome are endolymphatic pH acidification and luminal enlargement of the inner ear. However, the molecular contributions of specific cell types remain poorly characterized. Therefore, we aimed to identify pH regulators in pendrin-expressing cells that may contribute to the homeostasis of endolymph pH and define the cellular pathogenic mechanisms that contribute to the dysregulation of cochlear endolymph pH in Slc26a4

methodsWe used single-cell RNA sequencing to identify both Slc26a4-expressing cells and Kcnj10-expressing cells in wild-type (WT, Slc26a4

resultsWe found that spindle cells, which express pendrin, contain extrinsic cellular components, a factor that enables cell-to-cell communication. In addition, the gene expression profile informed the pH of the spindle cells. Compared to WT, the transcriptional profiles in Slc26a4

conclusionOverall, cell isolation of stria vascularis from WT and Slc26a4

Indexed as

DeafnessStria VascularisAnimalsAnion Transport ProteinsCochleaMiceRNASulfate TransportersAnion Transport ProteinsRNASlc26a4 protein, mouseSulfate TransportersAnnexin A1DFNB4Hearing lossPendred syndromeSingle-cell RNA sequencingSlc26a4Spindle cellsStria vascularis cell

Identifiers

PMID37322474
PMCPMC10268361
OpenAlexW4380871979

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.