Evidence map›Paper›PMID 37322120›Full record

ArticleNature medicine2023

Antigen-driven colonic inflammation is associated with development of dysplasia in primary sclerosing cholangitis.

Dustin G Shaw, Raúl Aguirre-Gamboa, Marcos C Vieira, Saideep Gona, Nicholas DiNardi, Anni Wang, Anne Dumaine, Jody Gelderloos-Arends, Zachary M Earley, Katherine R Meckel and 18 more

Open access · hybridAbstract read
In one paragraph

Article in Nature medicine, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed, 1 pooled it
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Pathophysiology of colitis-associated colorectal cancer.Nature reviews. Gastroenterology & hepatology · 2026
    Review
  5. Review
  6. Article
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  8. Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Navigating the Hepatic Immune Landscape With Fine Needle Aspiration of the Liver-An Emerging Technique.Liver international : official journal of the International Association for the Study of the Liver · 2025
    Article
  16. Article
  17. Article
  18. Review
  19. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 7 institutions in 4 countries.

Dustin G Shaw *Committee on Immunology, University of Chicago, Chicago, IL, USA.
Raúl Aguirre-Gamboa *Department of Medicine, University of Chicago, Chicago, IL, USA.ORCID 0000-0003-2505-3574
Marcos C VieiraDepartment of Ecology and Evolution, University of Chicago, Chicago, IL, USA.
Saideep GonaDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Nicholas DiNardiCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Anni WangCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Anne DumaineDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Jody Gelderloos-ArendsDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.
Zachary M EarleyCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Katherine R MeckelDepartment of Medicine, University of Chicago, Chicago, IL, USA.
Cezary CiszewskiCommittee on Immunology, University of Chicago, Chicago, IL, USA.
Anabella CastilloDivision of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Kelly MonroeDepartment of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Joana TorresDivision of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0003-2895-5821
Shailja C ShahDivision of Gastroenterology, University of California San Diego, San Diego, CA, USA.
Jean-Frédéric ColombelDivision of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.ORCID 0000-0001-6472-249X
Steven ItzkowitzDivision of Gastroenterology, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Rodney NewberryDepartment of Internal Medicine, Washington University School of Medicine, St. Louis, MO, USA.
Russell D CohenUniversity of Chicago Inflammatory Bowel Disease Center, Chicago, IL, USA.
David T RubinUniversity of Chicago Inflammatory Bowel Disease Center, Chicago, IL, USA.
Christopher QuinceOrganisms and Ecosystems, Earlham Institute, Norwich, NR4 7UZ, UK.
Sarah CobeyDepartment of Ecology and Evolution, University of Chicago, Chicago, IL, USA.ORCID 0000-0001-5298-8979
Iris H JonkersDepartment of Genetics, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.ORCID 0000-0003-2304-7939
Christopher R WeberDepartment of Pathology, University of Chicago, Chicago, IL, USA.
Joel PekowUniversity of Chicago Inflammatory Bowel Disease Center, Chicago, IL, USA.
Patrick C WilsonCommittee on Immunology, University of Chicago, Chicago, IL, USA.ORCID 0000-0002-3537-1245
Luis B BarreiroCommittee on Immunology, University of Chicago, Chicago, IL, USA. lbarreiro@uchicago.edu.
Bana JabriCommittee on Immunology, University of Chicago, Chicago, IL, USA. bjabri@bsd.uchicago.edu.ORCID 0000-0001-7427-4424
University of Chicago · USIcahn School of Medicine at Mount Sinai · USUniversity Medical Center Groningen · NLWashington University in St. Louis · USQuadram Institute · GBUniversity of California San Diego · USUniversity of Lisbon · PT

Funding

MEDICAL SCIENTIST TRAININGT32GM007281 · NIGMS · UNIVERSITY OF CHICAGO · PI CLARK, MARCUS RAMSAY · 1985 to 2022
$32.1M
ULTRASTRUCTURE AND CYTOMORPHOLOGY COREP30DK042086 · NIDDK · UNIVERSITY OF CHICAGO · PI CHANG, EUGENE B · 1990 to 2025
$29.8M
San Diego Digestive Diseases Research CenterP30DK120515 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Bernd G. Schnabl · 2019 to 2026
$10.8M
Genetic Mechanisms and Evolution-RenewalT32GM139782 · NIGMS · UNIVERSITY OF CHICAGO · PI Francesca Luca, John Novembre · 2021 to 2026
$5.1M
Adaptive immunity in primary sclerosing cholangitis patients at risk for colorectal cancerF30DK121470 · NIDDK · UNIVERSITY OF CHICAGO · PI SHAW, DUSTIN · 2019 to 2022
$203k
Dissecting the role of the gut microbiome on striatal chromatin conformation and drug-seeking behaviorF99NS124187 · NINDS · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI MECKEL, KATHERINE · 2021 to 2021
$45k
Optimization of Helicobacter pylori-related Disease Outcomes in VeteransIK2CX002027 · VA · VETERANS HEALTH ADMINISTRATION · PI SHAILJA C SHAH · 2020 to 2026
–
Biotechnology and Biological Sciences Research Council BBS/E/T/000PR9817CSRD VA IK2 CX002027NIDDK NIH HHS F30 DK121470NIDDK NIH HHS P30 DK042086NIDDK NIH HHS P30 DK120515NIGMS NIH HHS T32 GM007281NIGMS NIH HHS T32 GM139782NINDS NIH HHS F99 NS124187
6 · The paper itself

Abstract

Primary sclerosing cholangitis (PSC) is an immune-mediated disease of the bile ducts that co-occurs with inflammatory bowel disease (IBD) in almost 90% of cases. Colorectal cancer is a major complication of patients with PSC and IBD, and these patients are at a much greater risk compared to patients with IBD without concomitant PSC. Combining flow cytometry, bulk and single-cell transcriptomics, and T and B cell receptor repertoire analysis of right colon tissue from 65 patients with PSC, 108 patients with IBD and 48 healthy individuals we identified a unique adaptive inflammatory transcriptional signature associated with greater risk and shorter time to dysplasia in patients with PSC. This inflammatory signature is characterized by antigen-driven interleukin-17A (IL-17A)

Indexed as

Cholangitis, SclerosingColorectal NeoplasmsInflammatory Bowel DiseasesHumansInflammation

Identifiers

PMID37322120
PMCPMC10287559
OpenAlexW4380872544

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.