Evidence map›Paper›PMID 37322074›Full record

ArticleScientific reports2023

Cis-regulatory elements and transcription factors related to auxin signaling in the streptophyte algae Klebsormidium nitens.

Noriaki Tounosu, Kanami Sesoko, Koichi Hori, Mie Shimojima, Hiroyuki Ohta

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
3.2field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Algae.Scientific reports · 2025
    Article
  3. Origin and evolution of auxin-mediated acid growth.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Biotic interactions, evolutionary forces and the pan-plant specialized metabolism.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Noriaki TounosuSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 B-65, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan.
Kanami SesokoSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 B-65, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan.
Koichi HoriSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 B-65, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan. hori.k@lipid.bio.titech.ac.jp.
Mie ShimojimaSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 B-65, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan.
Hiroyuki OhtaSchool of Life Science and Technology, Tokyo Institute of Technology, 4259 B-65, Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan. ohta.h.ab@m.titech.ac.jp.
Tokyo Institute of Technology · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The phytohormone auxin affects numerous processes in land plants. The central auxin signaling machinery, called the nuclear auxin pathway, is mediated by its pivotal receptor named TRANSPORT INHIBITOR RESPONSE 1/AUXIN SIGNALING F-BOX (TIR1/AFB). The nuclear auxin pathway is widely conserved in land plants, but auxin also accumulates in various algae. Although auxin affects the growth of several algae, the components that mediate auxin signaling have not been identified. We previously reported that exogenous auxin suppresses cell proliferation in the Klebsormidium nitens that is a member of streptophyte algae, a paraphyletic group sharing the common ancestor with land plants. Although K. nitens lacks TIR1/AFB, auxin affects the expression of numerous genes. Thus, elucidation of the mechanism of auxin-inducible gene expression in K. nitens would provide important insights into the evolution of auxin signaling. Here, we show that some motifs are enriched in the promoter sequences of auxin-inducible genes in K. nitens. We also found that the transcription factor KnRAV activates several auxin-inducible genes and directly binds the promoter of KnLBD1, a representative auxin-inducible gene. We propose that KnRAV has the potential to regulate auxin-responsive gene expression in K. nitens.

Indexed as

Arabidopsis ProteinsF-Box ProteinsStreptophytaGene Expression Regulation, PlantIndoleacetic AcidsPlant Growth RegulatorsPlantsTranscription FactorsArabidopsis ProteinsF-Box ProteinsIndoleacetic AcidsPlant Growth RegulatorsTranscription Factors

Identifiers

PMID37322074
PMCPMC10272232
OpenAlexW4380787853

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.