Evidence map›Paper›PMID 37318344›Full record

ArticleApplied and environmental microbiology2023

Host and Water Microbiota Are Differentially Linked to Potential Human Pathogen Accumulation in Oysters.

Rachel E Diner, Amy Zimmer-Faust, Emily Cooksey, Sarah Allard, Sho M Kodera, Emily Kunselman, Yash Garodia, Marc P Verhougstraete, Andrew E Allen, John Griffith and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
7.8field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

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  13. Assessing fecal contamination from human and environmental sources usingmedRxiv : the preprint server for health sciences · 2024
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Rachel E DinerUniversity of California, San Diego, Department of Pediatrics, La Jolla, California, USA.ORCID 0000-0003-4546-5242
Amy Zimmer-FaustSouthern California Coastal Water Research Project, Microbiology Group, Costa Mesa, California, USA.
Emily CookseyEnvironment, Exposure Science and Risk Assessment Center, University of Arizona Mel and Enid Zuckerman College of Public Health, Tucson, Arizona, USA.
Sarah AllardUniversity of California, San Diego, Department of Pediatrics, La Jolla, California, USA.
Sho M KoderaUniversity of California, San Diego, Scripps Institution of Oceanography, La Jolla, California, USA.
Emily KunselmanUniversity of California, San Diego, Scripps Institution of Oceanography, La Jolla, California, USA.ORCID 0000-0002-3866-5644
Yash GarodiaUniversity of California, San Diego, Scripps Institution of Oceanography, La Jolla, California, USA.
Marc P VerhougstraeteEnvironment, Exposure Science and Risk Assessment Center, University of Arizona Mel and Enid Zuckerman College of Public Health, Tucson, Arizona, USA.
Andrew E AllenUniversity of California, San Diego, Scripps Institution of Oceanography, La Jolla, California, USA.ORCID 0000-0001-5911-6081
John GriffithSouthern California Coastal Water Research Project, Microbiology Group, Costa Mesa, California, USA.
Jack A GilbertUniversity of California, San Diego, Department of Pediatrics, La Jolla, California, USA.
Scripps Institution of Oceanography · USSouthern California Coastal Water Research Project · USUniversity of Arizona · USJ. Craig Venter Institute · US

Funding

UCSD/SDSU IRACDAK12GM068524 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TREJO, JOANN · 2003 to 2025
$24.4M
NIGMS NIH HHS K12 GM068524
6 · The paper itself

Abstract

Oysters play an important role in coastal ecology and are a globally popular seafood source. However, their filter-feeding lifestyle enables coastal pathogens, toxins, and pollutants to accumulate in their tissues, potentially endangering human health. While pathogen concentrations in coastal waters are often linked to environmental conditions and runoff events, these do not always correlate with pathogen concentrations in oysters. Additional factors related to the microbial ecology of pathogenic bacteria and their relationship with oyster hosts likely play a role in accumulation but are poorly understood. In this study, we investigated whether microbial communities in water and oysters were linked to accumulation of Vibrio parahaemolyticus, Vibrio vulnificus, or fecal indicator bacteria. Site-specific environmental conditions significantly influenced microbial communities and potential pathogen concentrations in water. Oyster microbial communities, however, exhibited less variability in microbial community diversity and accumulation of target bacteria overall and were less impacted by environmental differences between sites. Instead, changes in specific microbial taxa in oyster and water samples, particularly in oyster digestive glands, were linked to elevated levels of potential pathogens. For example, increased levels of V. parahaemolyticus were associated with higher relative abundances of cyanobacteria, which could represent an environmental vector for

Indexed as

BivalviaOstreidaeVibrio parahaemolyticusVibrio vulnificusAnimalsBacteriaHumansWaterWateraquacultureenvironmental microbiologyfecal organismsoyster microbiomePacific oystershellfishVibrio parahaemolyticusVibrio vulnificus

Identifiers

PMID37318344
PMCPMC10370324
OpenAlexW4380730008

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.