Evidence map›Paper›PMID 37317284›Full record

ArticleMicroorganisms2023

Expression of Envelope Protein Encoded by Endogenous Retrovirus K102 in Rheumatoid Arthritis Neutrophils.

Amanda Laine, Xiaoxing Wang, Kathryn Ni, Sarah E B Smith, Rayan Najjar, Leanne S Whitmore, Michael Yacoub, Alison Bays, Michael Gale, Tomas Mustelin

Open access · goldAbstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.4field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Article
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  4. Article
  5. Article
  6. Review
  7. Autoimmunity: the neoantigen hypothesis.Frontiers in immunology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Amanda LaineDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0003-3474-2515
Xiaoxing WangDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Kathryn NiDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Sarah E B SmithDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-8954-3487
Rayan NajjarDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Leanne S WhitmoreCenter for Innate Immunity and Infectious Disease, Department of Immunology, University of Washington, Seattle, WA 98195, USA.
Michael YacoubDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.ORCID 0009-0008-8893-038X
Alison BaysDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.
Michael GaleCenter for Innate Immunity and Infectious Disease, Department of Immunology, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0002-6332-7436
Tomas MustelinDivision of Rheumatology, Department of Medicine, University of Washington, Seattle, WA 98195, USA.ORCID 0000-0001-5912-8840
University of Washington · US

Funding

University of Washington Arboviral Research Network (UWARN)U01AI151698 · NIAID · UNIVERSITY OF WASHINGTON · PI Michael Gale, PETER MACGARR RABINOWITZ · 2020 to 2026
$13.3M
RESEARCH TRAINING IN RHEUMATOLOGYT32AR007108 · NIAMS · UNIVERSITY OF WASHINGTON · PI Shaun Jackson, Tomas M Mustelin · 1986 to 2026
$6.6M
Role of protein citrullination in rheumatoid arthritisR01AR074939 · NIAMS · UNIVERSITY OF WASHINGTON · PI MUSTELIN, TOMAS M · 2020 to 2024
$1.9M
HERV-K immunity, a trigger of citrullination in rheumatoid arthritis?R21AR077266 · NIAMS · UNIVERSITY OF WASHINGTON · PI MUSTELIN, TOMAS M · 2021 to 2022
$425k
NIAID NIH HHS U01 AI151698NIAMS NIH HHS R01 AR074939NIAMS NIH HHS R21 AR077266NIAMS NIH HHS T32 AR007108NIH HHS R01 AR074939NIH HHS R21 AR075134, and R21 AR077266 to T.M. and T32 AR007108 to R.N., and R01 AI145296 and R01 AI127463 to M.G.
6 · The paper itself

Abstract

Many patients suffering from autoimmune diseases have autoantibodies against proteins encoded by genomic retroelements, suggesting that normal epigenetic silencing is insufficient to prevent the production of the encoded proteins for which immune tolerance appears to be limited. One such protein is the transmembrane envelope (Env) protein encoded by human endogenous retrovirus K (HERV-K). We reported recently that patients with rheumatoid arthritis (RA) have IgG autoantibodies that recognize Env. Here, we use RNA sequencing of RA neutrophils to analyze HERV-K expression and find that only two loci with an intact open-reading frame for Env, HERV-K102, and K108 are expressed, but only the former is increased in RA. In contrast, other immune cells express more K108 than K102. Patient autoantibodies recognized endogenously expressed Env in breast cancer cells and in RA neutrophils but not healthy controls. A monoclonal anti-Env antibody also detected Env on the surface of RA neutrophils but very little on the surface of other immune cells. We conclude that HERV-K102 is the locus that produces Env detectable on the surface of neutrophils in RA. The low levels of HERV-K108 transcripts may contribute only marginally to cell surface Env on neutrophils or other immune cells in some patients.

Indexed as

autoantibodiesendogenous retrovirusenvelopegranulocytesHERV-Kneutrophils

Identifiers

PMID37317284
PMCPMC10223813
OpenAlexW4377102892

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.