Evidence map›Paper›PMID 37317135›Full record

ArticleMicroorganisms2023

Exploring the Bacterial Community in Aged Fecal Sources from Dairy Cows: Impacts on Fecal Source Tracking.

Megan L Devane, William Taylor, Pierre-Yves Dupont, Bridget Armstrong, Louise Weaver, Brent J Gilpin

Abstract read
In one paragraph

Article in Microorganisms, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Megan L DevaneHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.ORCID 0000-0003-3650-0528
William TaylorHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.
Pierre-Yves DupontHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.
Bridget ArmstrongHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.
Louise WeaverHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.
Brent J GilpinHealth and Environment Group, Institute of Environmental Science and Research, Christchurch 8041, New Zealand.ORCID 0000-0002-8109-2271

Funding

Ministry of Business Innovation and Employment, New Zealand Government C10X1006Strategic Science Internal Funding (SSIF) from Ministry for Business Innovation and Employment SSIF
6 · The paper itself

Abstract

(1) Background: This paper discusses the impact of agricultural activities on stream health, particularly in relation to dairy cow fecal pollution. The study explores the fecal microbiome of cattle and the potential ecological implications of aging fecal pollution on waterways. (2) Methods: The study examines changes in the bacterial community available for mobilization from in-situ decomposing cowpats and the effects of simulated rainfall. The microbiome of individual cowpats was monitored over 5.5 months. We used 16S rRNA metagenomics and machine learning software, FEAST (Fast Expectation-mAximization for microbial Source Tracking), for bacterial and fecal source assignments. (3) Results: The phyla Bacillota and Bacteroidota are dominant in the fecal microbiota of fresh cow feces but shift to Pseudomonodota, Actinomycetota, and environmental Bacteroidota in aged cowpats. Potential impacts of these bacterial community shifts on inputs to local agricultural streams are discussed in relation to water quality monitoring and aging sources of fecal contamination. We identified taxon orders that are potential indicators of fresh cattle sources (Oscillospirales and Bacteroidales) and aged sources (Peptostreptococcales-Tissierellales) in water bodies. (4) The paper highlights that bacterial metagenomic profiling can inform our understanding of the ecology of microbial communities in aquatic environments and the potential impacts of agricultural activities on ecosystem health.

Indexed as

16S rRNAcowpatFEASTfecal bacterial decayfecal source trackingmetagenomics

Identifiers

PMID37317135
PMCPMC10223543

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.