Evidence map›Paper›PMID 37316325›Full record

ArticleLife science alliance2023

N-terminal proteoforms may engage in different protein complexes.

Annelies Bogaert, Daria Fijalkowska, An Staes, Tessa Van de Steene, Marnik Vuylsteke, Charlotte Stadler, Sven Eyckerman, Kerstin Spirohn, Tong Hao, Michael A Calderwood and 1 more

Open access · goldAbstract read
In one paragraph

Article in Life science alliance, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 1 synthesis or guideline pooled it, 5 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Annelies BogaertVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID https://orcid.org/0000-0002-4467-4299
Daria FijalkowskaVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
An StaesVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Tessa Van de SteeneVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.
Marnik VuylstekeGnomixx, Melle, Belgium.
Charlotte StadlerDepartment of Protein Science, KTH Royal Institute of Technology and Science for Life Laboratories, Stockholm, Sweden.ORCID https://orcid.org/0000-0002-6781-1938
Sven EyckermanVIB Center for Medical Biotechnology, VIB, Ghent, Belgium.ORCID https://orcid.org/0000-0001-7525-0096
Kerstin SpirohnCenter for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA.
Tong HaoCenter for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA.
Michael A CalderwoodCenter for Cancer Systems Biology (CCSB), Dana-Farber Cancer Institute, Boston, MA, USA.
Kris GevaertVIB Center for Medical Biotechnology, VIB, Ghent, Belgium kris.gevaert@vib-ugent.be.ORCID https://orcid.org/0000-0002-4237-0283
Ghent University · BEHarvard University · USScience for Life Laboratory · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Alternative translation initiation and alternative splicing may give rise to N-terminal proteoforms, proteins that differ at their N-terminus compared with their canonical counterparts. Such proteoforms can have altered localizations, stabilities, and functions. Although proteoforms generated from splice variants can be engaged in different protein complexes, it remained to be studied to what extent this applies to N-terminal proteoforms. To address this, we mapped the interactomes of several pairs of N-terminal proteoforms and their canonical counterparts. First, we generated a catalogue of N-terminal proteoforms found in the HEK293T cellular cytosol from which 22 pairs were selected for interactome profiling. In addition, we provide evidence for the expression of several N-terminal proteoforms, identified in our catalogue, across different human tissues, as well as tissue-specific expression, highlighting their biological relevance. Protein-protein interaction profiling revealed that the overlap of the interactomes for both proteoforms is generally high, showing their functional relation. We also showed that N-terminal proteoforms can be engaged in new interactions and/or lose several interactions compared with their canonical counterparts, thus further expanding the functional diversity of proteomes.

Indexed as

Alternative SplicingProteomeCytosolHEK293 CellsHumansProteome

Identifiers

PMID37316325
PMCPMC10267514
OpenAlexW4380683335

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.