Evidence map›Paper›PMID 37315073›Full record

ArticlePLoS biology2023

NANOG is required to establish the competence for germ-layer differentiation in the basal tetrapod axolotl.

Luke A Simpson, Darren Crowley, Teri Forey, Helena Acosta, Zoltan Ferjentsik, Jodie Chatfield, Alexander Payne, Benjamin S Simpson, Catherine Redwood, James E Dixon and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 3 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 3 institutions in 1 country.

Luke A SimpsonSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Darren CrowleySchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Teri ForeySchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Helena AcostaSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Zoltan FerjentsikSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Jodie ChatfieldSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Alexander PayneSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Benjamin S SimpsonTumour Immunogenomics and Immunosurveillance Laboratory, University College London Cancer Institute, London, United Kingdom.
Catherine RedwoodSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
James E DixonSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Nadine HolmesSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Fei SangSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Ramiro AlberioSchool of Biosciences, University of Nottingham, Sutton Bonington Campus, Loughborough, United Kingdom.
Matthew LooseSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Andrew D JohnsonSchool of Life Sciences, University of Nottingham, Queens Medical Centre, Nottingham, United Kingdom.
Queen's Medical Centre · GBUniversity of Nottingham · GBThe Francis Crick Institute · GB

Funding

Medical Research Council MR/N020979/1
6 · The paper itself

Abstract

Pluripotency defines the unlimited potential of individual cells of vertebrate embryos, from which all adult somatic cells and germ cells are derived. Understanding how the programming of pluripotency evolved has been obscured in part by a lack of data from lower vertebrates; in model systems such as frogs and zebrafish, the function of the pluripotency genes NANOG and POU5F1 have diverged. Here, we investigated how the axolotl ortholog of NANOG programs pluripotency during development. Axolotl NANOG is absolutely required for gastrulation and germ-layer commitment. We show that in axolotl primitive ectoderm (animal caps; ACs) NANOG and NODAL activity, as well as the epigenetic modifying enzyme DPY30, are required for the mass deposition of H3K4me3 in pluripotent chromatin. We also demonstrate that all 3 protein activities are required for ACs to establish the competency to differentiate toward mesoderm. Our results suggest the ancient function of NANOG may be establishing the competence for lineage differentiation in early cells. These observations provide insights into embryonic development in the tetrapod ancestor from which terrestrial vertebrates evolved.

Indexed as

Homeodomain ProteinsPluripotent Stem CellsAmbystoma mexicanumAnimalsCell DifferentiationGene Expression Regulation, DevelopmentalNanog Homeobox ProteinZebrafishHomeodomain ProteinsNanog Homeobox Protein

Identifiers

PMID37315073
PMCPMC10599592
OpenAlexW4380686120

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.