ArticleThe journal of physical chemistry. A2023
Ab Initio Derived Classical Force Field for Molecular Dynamics Simulations of ZnO Surfaces in Biological Environment.
Article in The journal of physical chemistry. A, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.
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Who cites it
3 citing papers in PubMed, 7 citations in OpenAlex.
- NPCoronaPredict: A Computational Pipeline for the Prediction of the Nanoparticle-Biomolecule Corona.Journal of chemical information and modeling · 2024Article
- Understanding the Role of Solvent on the Growth of Zinc Oxide: Insight from Experiment and Molecular Dynamics Simulations.Langmuir : the ACS journal of surfaces and colloids · 2024Article
- Biomolecular Adsorption on Nanomaterials: Combining Molecular Simulations with Machine Learning.Journal of chemical information and modeling · 2024Article
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Authors and funding
3 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Zinc oxide nanostructures are used in an ever increasing line of applications in technology and biomedical fields. This requires a detailed understanding of the phenomena that occur at the surface particularly in aqueous environments and in contact with biomolecules. In this work, we used ab initio molecular dynamics (AIMD) simulations to determine structural details of ZnO surfaces in water and to develop a general and transferable classical force field for hydrated ZnO surfaces. AIMD simulations show that water molecules dissociate near unmodified ZnO surfaces, forming hydroxyl groups at about 65% of the surface Zn atoms and protonating 3-coordinated surface oxygen atoms, while the rest of the surface Zn atoms bind molecularly adsorbed waters. Several force field atom types for ZnO surface atoms were identified by analysis of the specific connectivities of atoms. The analysis of the electron density was then used to determine partial charges and Lennard-Jones parameters for the identified force field atom types. The obtained force field was validated by comparison with AIMD results and with available experimental data on adsorption and immersion enthalpies, as well as adsorption free energies of several amino acids in methanol. The developed force field can be used for modeling of ZnO in aqueous and other fluid environments and in interaction with biomolecules.
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Registered trials
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