Evidence map›Paper›PMID 37313509›Full record

ArticleMolecular breeding : new strategies in plant improvement2022

A pan-genome data structure induced by pooled sequencing facilitates variant mining in heterogeneous germplasm.

Patrick A Reeves, Christopher M Richards

Open access · greenAbstract read
In one paragraph

Article in Molecular breeding : new strategies in plant improvement, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.3field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Biocultural diversity and crop improvement.Emerging topics in life sciences · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Patrick A ReevesAgricultural Research Service, United States Department of Agriculture, National Laboratory for Genetic Resources Preservation, 1111 South Mason Street, Fort Collins, CO 80521 USA.ORCID 0000-0001-9991-1397
Christopher M RichardsAgricultural Research Service, United States Department of Agriculture, National Laboratory for Genetic Resources Preservation, 1111 South Mason Street, Fort Collins, CO 80521 USA.ORCID 0000-0002-9978-6079
Agricultural Research Service · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Valuable genetic variation lies unused in gene banks due to the difficulty of exploiting heterogeneous germplasm accessions. Advances in molecular breeding, including transgenics and genome editing, present the opportunity to exploit hidden sequence variation directly. Here we describe the pan-genome data structure induced by whole-genome sequencing of pooled individuals from wild populations of Supplementary information: The online version contains supplementary material available at 10.1007/s11032-022-01308-6.

Indexed as

BioinformaticsCrop wild relativesDomesticationGenome editingHaplotypePhasingSequence variant

Identifiers

PMID37313509
PMCPMC10248589
OpenAlexW4283466661

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.