Evidence map›Paper›PMID 37313411›Full record

ArticleFrontiers in immunology2023

Machine learning analysis of humoral and cellular responses to SARS-CoV-2 infection in young adults.

Ricards Marcinkevics, Pamuditha N Silva, Anna-Katharina Hankele, Charlyn Dörnte, Sarah Kadelka, Katharina Csik, Svenja Godbersen, Algera Goga, Lynn Hasenöhrl, Pascale Hirschi and 39 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

49 authors.

Ricards MarcinkevicsDepartment of Computer Science, ETH Zurich, Zurich, Switzerland.
Pamuditha N SilvaInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Anna-Katharina HankeleAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Charlyn DörnteMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Sarah KadelkaInstitute of Integrative Biology, ETH Zurich, Zurich, Switzerland.
Katharina CsikInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Svenja GodbersenInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Algera GogaInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Lynn HasenöhrlInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Pascale HirschiInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Hasan KabakciInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Mary P LaPierreInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Johanna MayrhoferInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Alexandra C TitleInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Xuan ShuInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Nouell BaiioudAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Sandra BernalAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Laura DassistiAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Mara D Saenz-de-JuanoAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Meret SchmidhauserAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Giulia SilvestrelliAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Simon Z UlbrichAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Thea J UlbrichAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Tamara WyssAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.
Daniel J StekhovenNEXUS Personalized Health Technologies, Zurich & SIB Swiss Institute of Bioinformatics, ETH Zurich, Lausanne, Switzerland.
Faisal S Al-QuaddoomiNEXUS Personalized Health Technologies, Zurich & SIB Swiss Institute of Bioinformatics, ETH Zurich, Lausanne, Switzerland.
Shuqing YuNEXUS Personalized Health Technologies, Zurich & SIB Swiss Institute of Bioinformatics, ETH Zurich, Lausanne, Switzerland.
Mascha BinderDepartment of Internal Medicine IV, Oncology/Hematology, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany.
Christoph SchultheißDepartment of Internal Medicine IV, Oncology/Hematology, Martin-Luther-University Halle-Wittenberg, Halle (Saale), Germany.
Claudia ZindelDepartment of Health Science, Translational Medicine, ETH Zurich, Zurich, Switzerland.
Christoph KollingDepartment of Health Science, Translational Medicine, ETH Zurich, Zurich, Switzerland.
Jörg GoldhahnDepartment of Health Science, Translational Medicine, ETH Zurich, Zurich, Switzerland.
Bahram Kasmapour SeighalaniMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Polina ZjablovskajaMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Frank HardungMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Marc SchusterMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Anne RichterMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Yi-Ju HuangMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Gereon LauerMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Herrad BaurmannMiltenyi Biotec B.V. & Co. KG, Bergisch Gladbach, Germany.
Jun Siong LowInstitute for Research in Biomedicine, Università della Svizzera Italiana, Bellinzona, Switzerland.
Daniela VaqueirinhoInstitute for Research in Biomedicine, Università della Svizzera Italiana, Bellinzona, Switzerland.
Sandra JovicInstitute for Research in Biomedicine, Università della Svizzera Italiana, Bellinzona, Switzerland.
Luca PiccoliHumabs BioMed SA, a Subsidiary of Vir Biotechnology, Bellinzona, Switzerland.
Sandra CiesekInstitute of Medical Virology, Goethe University Frankfurt, Frankfurt am Main, Germany.
Julia E VogtDepartment of Computer Science, ETH Zurich, Zurich, Switzerland.
Federica SallustoInstitute for Research in Biomedicine, Università della Svizzera Italiana, Bellinzona, Switzerland.
Markus StoffelInstitute of Molecular Health Sciences, ETH Zurich, Zurich, Switzerland.
Susanne E UlbrichAnimal Physiology, Institute of Agricultural Sciences, ETH Zurich, Zurich, Switzerland.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) induces B and T cell responses, contributing to virus neutralization. In a cohort of 2,911 young adults, we identified 65 individuals who had an asymptomatic or mildly symptomatic SARS-CoV-2 infection and characterized their humoral and T cell responses to the Spike (S), Nucleocapsid (N) and Membrane (M) proteins. We found that previous infection induced CD4 T cells that vigorously responded to pools of peptides derived from the S and N proteins. By using statistical and machine learning models, we observed that the T cell response highly correlated with a compound titer of antibodies against the Receptor Binding Domain (RBD), S and N. However, while serum antibodies decayed over time, the cellular phenotype of these individuals remained stable over four months. Our computational analysis demonstrates that in young adults, asymptomatic and paucisymptomatic SARS-CoV-2 infections can induce robust and long-lasting CD4 T cell responses that exhibit slower decays than antibody titers. These observations imply that next-generation COVID-19 vaccines should be designed to induce stronger cellular responses to sustain the generation of potent neutralizing antibodies.

Indexed as

COVID-19Antibodies, NeutralizingCOVID-19 VaccinesHumansMachine LearningSARS-CoV-2Antibodies, NeutralizingCOVID-19 Vaccinesantibody titersmachine learningneutralizing antibodiesSARS-CoV-2T cell response

Identifiers

PMID37313411
PMCPMC10258347

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.