ArticleMolecular breeding : new strategies in plant improvement2023
GWAS and genomic prediction for pre-harvest sprouting tolerance involving sprouting score and two other related traits in spring wheat.
Article in Molecular breeding : new strategies in plant improvement, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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15 citing papers in PubMed.
- Investigations into genetic control of six spike traits with a focus on breeding for terminal heat stress tolerance in common wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- Dissecting the genetic architecture of pre-harvest sprouting tolerance in Indian dwarf wheat (Triticum sphaerococcum) by multi-locus association analysis.Scientific reports · 2025Article
- QTL detection, validation, candidate genes and KASP markers for pre-harvest sprouting tolerance in white grained common wheat.BMC plant biology · 2025Article
- Genome-wide identification of QTNs and candidate genes in Ethiopian sorghum (Sorghum bicolor (L.) moench) landraces using SNP-based approaches.BMC genomic data · 2025Article
- Genetic dissection of plant architecture reveals haplotypes controlling sink-related traits in oilseed rape under limited nitrogen fertilization.BMC plant biology · 2025Article
- Genome-wide association study of pre-harvest sprouting resistance and grain color in common wheat (Triticum aestivum L.).BMC plant biology · 2025Article
- Breeding Wheat (Plants (Basel, Switzerland) · 2025Review
- Genetic loci and novel candidate causal genes for preharvest sprouting resistance in wheat (Triticum aestivum L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Identification of quantitative trait nucleotides for grain quality in bread wheat under heat stress.Scientific reports · 2025Article
- Unraveling Allelic Impacts on Pre-Harvest Sprouting Resistance inPlants (Basel, Switzerland) · 2025Article
- Linkage and association analysis to identify wheat pre-harvest sprouting resistance genetic regions and develop KASP markers.Molecular breeding : new strategies in plant improvement · 2025Article
- Comparative transcriptomes and WGCNA reveal hub genes for spike germination in different quinoa lines.BMC genomics · 2024Article
- Physical map of QTL for eleven agronomic traits across fifteen environments, identification of related candidate genes, and development of KASP markers with emphasis on terminal heat stress tolerance in common wheat.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
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11 authors.
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Abstract
In wheat, a genome-wide association study (GWAS) and genomic prediction (GP) analysis were conducted for pre-harvest sprouting (PHS) tolerance and two of its related traits. For this purpose, an association panel of 190 accessions was phenotyped for PHS (using sprouting score), falling number, and grain color over two years and genotyped with 9904 DArTseq based SNP markers. GWAS for main-effect quantitative trait nucleotides (M-QTNs) using three different models (CMLM, SUPER, and FarmCPU) and epistatic QTNs (E-QTNs) using PLINK were performed. A total of 171 M-QTNs (CMLM, 47; SUPER, 70; FarmCPU, 54) for all three traits, and 15 E-QTNs involved in 20 first-order epistatic interactions were identified. Some of the above QTNs overlapped the previously reported QTLs, MTAs, and cloned genes, allowing delineating 26 PHS-responsive genomic regions that spread over 16 wheat chromosomes. As many as 20 definitive and stable QTNs were considered important for use in marker-assisted recurrent selection (MARS). The gene, Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-023-01357-5.
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