Evidence map›Paper›PMID 37311938›Full record

ArticleThe ISME journal2023

Relation of pest insect-killing and soilborne pathogen-inhibition abilities to species diversification in environmental Pseudomonas protegens.

Daniel Garrido-Sanz, Pilar Vesga, Clara M Heiman, Aline Altenried, Christoph Keel, Jordan Vacheron

Abstract read
In one paragraph

Article in The ISME journal, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
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  8. Safety Assessment ofJournal of toxicology · 2026
    Article
  9. Article
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  15. Article
  16. Expanding theFrontiers in microbiology · 2024
    Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Daniel Garrido-SanzDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. daniel.garridosanz@unil.ch.
Pilar VesgaDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. pilar.vesga@upm.es.ORCID http://orcid.org/0000-0002-8156-8110
Clara M HeimanDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland.ORCID http://orcid.org/0000-0003-4550-7537
Aline AltenriedDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland.
Christoph KeelDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. christoph.keel@unil.ch.ORCID http://orcid.org/0000-0002-8968-735X
Jordan VacheronDepartment of Fundamental Microbiology, University of Lausanne, CH-1015, Lausanne, Switzerland. jordan.vacheron@unil.ch.ORCID http://orcid.org/0000-0003-0031-1338

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Strains belonging to the Pseudomonas protegens phylogenomic subgroup have long been known for their beneficial association with plant roots, notably antagonising soilborne phytopathogens. Interestingly, they can also infect and kill pest insects, emphasising their interest as biocontrol agents. In the present study, we used all available Pseudomonas genomes to reassess the phylogeny of this subgroup. Clustering analysis revealed the presence of 12 distinct species, many of which were previously unknown. The differences between these species also extend to the phenotypic level. Most of the species were able to antagonise two soilborne phytopathogens, Fusarium graminearum and Pythium ultimum, and to kill the plant pest insect Pieris brassicae in feeding and systemic infection assays. However, four strains failed to do so, likely as a consequence of adaptation to particular niches. The absence of the insecticidal Fit toxin explained the non-pathogenic behaviour of the four strains towards Pieris brassicae. Further analyses of the Fit toxin genomic island evidence that the loss of this toxin is related to non-insecticidal niche specialisation. This work expands the knowledge on the growing Pseudomonas protegens subgroup and suggests that loss of phytopathogen inhibition and pest insect killing abilities in some of these bacteria may be linked to species diversification processes involving adaptation to particular niches. Our work sheds light on the important ecological consequences of gain and loss dynamics for functions involved in pathogenic host interactions of environmental bacteria.

Indexed as

InsectaPseudomonasAnimalsPhylogenyPlants

Identifiers

PMID37311938
PMCPMC10432460

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.