Evidence map›Paper›PMID 37311740›Full record

ArticleNature communications2023

Holocentromeres can consist of merely a few megabase-sized satellite arrays.

Yi-Tzu Kuo, Amanda Souza Câmara, Veit Schubert, Pavel Neumann, Jiří Macas, Michael Melzer, Jianyong Chen, Jörg Fuchs, Simone Abel, Evelyn Klocke and 8 more

Abstract read
In one paragraph

Article in Nature communications, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Revisiting the question: When is a centromere not a kinetochore?Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  7. The dynamic centromere.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  8. Article
  9. Article
  10. Centromeres drive and take a break.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2025
    Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. The holocentricity in the dioecious nutmeg (Myristica fragrans) is not based on major satellite repeats.Chromosome research : an international journal on the molecular, supramolecular and evolutionary aspects of chromosome biology · 2024
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yi-Tzu KuoLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany. kuo@ipk-gatersleben.de.ORCID 0000-0001-5893-3784
Amanda Souza CâmaraLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.
Veit SchubertLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.ORCID 0000-0002-3072-0485
Pavel NeumannBiology Centre, Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice, CZ-37005, Czech Republic.ORCID 0000-0001-6711-6639
Jiří MacasBiology Centre, Czech Academy of Sciences, Institute of Plant Molecular Biology, Branišovská 31, České Budějovice, CZ-37005, Czech Republic.ORCID 0000-0003-0829-1570
Michael MelzerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.
Jianyong ChenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.
Jörg FuchsLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.ORCID 0000-0003-4171-5371
Simone AbelJulius Kühn-Institute (JKI), Institute for Breeding Research on Horticultural Crops, Erwin-Baur-Str. 27, 06484, Quedlinburg, Germany.
Evelyn KlockeJulius Kühn-Institute (JKI), Institute for Breeding Research on Horticultural Crops, Erwin-Baur-Str. 27, 06484, Quedlinburg, Germany.ORCID 0000-0002-3153-1280
Bruno HuettelMax Planck Genome-Centre Cologne, Max Planck Institute for Plant Breeding Research, Cologne, 50829, Germany.ORCID 0000-0001-7165-1714
Axel HimmelbachLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.
Dmitri DemidovLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.
Frank DunemannJulius Kühn-Institute (JKI), Institute for Breeding Research on Horticultural Crops, Erwin-Baur-Str. 27, 06484, Quedlinburg, Germany.ORCID 0000-0002-3348-5177
Martin MascherLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany.ORCID 0000-0001-6373-6013
Takayoshi IshiiArid Land Research Center, Tottori University, 1390 Hamasaka, Tottori, 680-0001, Japan.ORCID 0000-0001-6370-3289
André MarquesDepartment of Chromosome Biology, Max Planck Institute for Plant Breeding Research, Cologne, 50829, Germany.ORCID 0000-0002-9567-2576
Andreas HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Corrensstrasse 3, 06466, Seeland, Germany. houben@ipk-gatersleben.de.ORCID 0000-0003-3419-239X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The centromere is the chromosome region where microtubules attach during cell division. In contrast to monocentric chromosomes with one centromere, holocentric species usually distribute hundreds of centromere units along the entire chromatid. We assembled the chromosome-scale reference genome and analyzed the holocentromere and (epi)genome organization of the lilioid Chionographis japonica. Remarkably, each of its holocentric chromatids consists of only 7 to 11 evenly spaced megabase-sized centromere-specific histone H3-positive units. These units contain satellite arrays of 23 and 28 bp-long monomers capable of forming palindromic structures. Like monocentric species, C. japonica forms clustered centromeres in chromocenters at interphase. In addition, the large-scale eu- and heterochromatin arrangement differs between C. japonica and other known holocentric species. Finally, using polymer simulations, we model the formation of prometaphase line-like holocentromeres from interphase centromere clusters. Our findings broaden the knowledge about centromere diversity, showing that holocentricity is not restricted to species with numerous and small centromere units.

Indexed as

Cell Cycle ProteinsCentromereCell DivisionChromatidsHeterochromatinCell Cycle ProteinsHeterochromatin

Identifiers

PMID37311740
PMCPMC10264360

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.