Evidence map›Paper›PMID 37310465›Full record

ArticlemSystems2023

Elucidating the CodY regulon in

Ye Gao, Saugat Poudel, Yara Seif, Zeyang Shen, Bernhard O Palsson

Open access · goldAbstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in mSystems, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. mBio · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Mutations in thebioRxiv : the preprint server for biology · 2024
    Article
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Ye GaoDepartment of Biological Sciences, University of California San Diego , La Jolla, California, USA.ORCID 0000-0001-8519-1392
Saugat PoudelDepartment of Bioengineering, University of California San Diego , La Jolla, California, USA.
Yara SeifDepartment of Bioengineering, University of California San Diego , La Jolla, California, USA.
Zeyang ShenDepartment of Bioengineering, University of California San Diego , La Jolla, California, USA.
Bernhard O PalssonDepartment of Bioengineering, University of California San Diego , La Jolla, California, USA.
University of California San Diego · USNovo Nordisk Foundation · DK

Funding

Systems Biology Approach to Redefine Susceptibility Testing and Treatment of MDR Pathogens in the Context of Host ImmunityU01AI124316 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PALSSON, BERNHARD O · 2016 to 2020
$10.2M
NIAID NIH HHS U01 AI124316
6 · The paper itself

Abstract

CodY is a conserved broad-acting transcription factor that regulates the expression of genes related to amino acid metabolism and virulence in Gram-positive bacteria. Here, we performed the first

Indexed as

Methicillin-Resistant Staphylococcus aureusStaphylococcal InfectionsAmino Acids, Branched-ChainHumansRegulonRepressor ProteinsStaphylococcus aureusTranscription FactorsAmino Acids, Branched-ChainRepressor ProteinsTranscription FactorsCodYMetabolismStaphylococcus aureusTranscription factor binding sites

Identifiers

PMID37310465
PMCPMC10470025
OpenAlexW4380422195

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.