ArticleMolecular breeding : new strategies in plant improvement2023
Genome-wide survey identified superior and rare haplotypes for plant height in the north-eastern soybean germplasm of China.
Article in Molecular breeding : new strategies in plant improvement, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.
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9 citing papers in PubMed.
- Genome-Wide Association Study and Candidate Gene Mining for First Pod Height in Soybean.Plants (Basel, Switzerland) · 2026Article
- Epigenomics and Non-Coding RNAs in Soybean Adaptation to Abiotic Stresses.International journal of molecular sciences · 2025Review
- Integrative QTL mapping and candidate gene analysis for main stem node number in soybean.BMC plant biology · 2025Article
- A genome-wide association study prioritizes VRN1-2 as a candidate gene associated with plant height in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Identification of Quantitative Trait Loci for Node Number, Pod Number, and Seed Number in Soybean.International journal of molecular sciences · 2025Article
- GWAS analysis revealed genomic loci and candidate genes associated with the 100-seed weight in high-latitude-adapted soybean germplasm.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Identification of superior haplotypes and candidate gene for seed size-related traits in soybean (Molecular breeding : new strategies in plant improvement · 2025Article
- Identification of superior and rare haplotypes to optimize branch number in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Soybean functional genomics: bridging theory and application.Molecular breeding : new strategies in plant improvement · 2024Article
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6 authors.
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Abstract
The proper and efficient utilization of natural genetic diversity can significantly impact crop improvements. Plant height is a quantitative trait governing the plant type as well as the yield and quality of soybean. Here, we used a combined approach including a genome-wide association study (GWAS) and haplotype and candidate gene analyses to explore the genetic basis of plant height in diverse natural soybean populations. For the GWAS analysis, we used the whole-genome resequencing data of 196 diverse soybean cultivars collected from different accumulated temperature zones of north-eastern China to detect the significant single-nucleotide polymorphisms (SNPs) associated with plant height across three environments (E1, E2, and E3). A total of 33 SNPs distributed on four chromosomes, viz., Chr.02, Chr.04, Chr.06, and Chr.19, were identified to be significantly associated with plant height across the three environments. Among them, 23 were consistently detected in two or more environments and the remaining 10 were identified in only one environment. Interestingly, all the significant SNPs detected on the respective chromosomes fell within the physical interval of linkage disequilibrium (LD) decay (± 38.9 kb). Hence, these genomic regions were considered to be four quantitative trait loci (QTLs), viz., Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-023-01363-7.
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