Evidence map›Paper›PMID 37309353›Full record

ArticleMolecular breeding : new strategies in plant improvement2021

Identification of SNP markers associated with soybean fatty acids contents by genome-wide association analyses.

Mikyung Sung, Kyujung Van, Sungwoo Lee, Randall Nelson, Jonathan LaMantia, Earl Taliercio, Leah K McHale, M A Rouf Mian

Open access · greenAbstract read
In one paragraph

Article in Molecular breeding : new strategies in plant improvement, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genome-Wide Association Study for Resistance toPlants (Basel, Switzerland) · 2024
    Article
  5. Article
  6. Improving linolenic acid content in rapeseed oil by overexpression ofMolecular breeding : new strategies in plant improvement · 2024
    Article
  7. Article
  8. Article
  9. Article
  10. Metabolite Contents and Antioxidant Activities of Soybean (Antioxidants (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Mikyung Sung *Department of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695 USA.
Kyujung Van *Department of Horticulture and Crop Science, The Ohio State University, Columbus, OH 43210 USA.
Sungwoo LeeDepartment of Crop and Soil Sciences, North Carolina State University, Raleigh, NC 27695 USA.
Randall NelsonDepartment of Crop Sciences, University of Illinois and USDA-ARS (retired), Urbana, IL 61801 USA.
Jonathan LaMantiaCorn, Soybean, Wheat Quality Research Unit, USDA-ARS, Wooster, OH 44691 USA.
Earl TaliercioSoybean and Nitrogen Fixation Unit, USDA-ARS, Raleigh, NC 27607 USA.
Leah K McHaleDepartment of Horticulture and Crop Science, The Ohio State University, Columbus, OH 43210 USA.ORCID 0000-0003-1028-2315
M A Rouf MianSoybean and Nitrogen Fixation Unit, USDA-ARS, Raleigh, NC 27607 USA.
Agricultural Research Service · USNorth Carolina State University · USThe Ohio State University · USSmithsonian Marine Station · USUniversity of Illinois Urbana-Champaign · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Composition of fatty acids (FAs) in soybean seed is important for the quality and uses of soybean oil. Using gas chromatography, we have measured soybean FAs profiles of 621 soybean accessions (maturity groups I through IV) grown in five different environments; Columbus, OH (2015), Wooster, OH (2014 and 2015), Plymouth, NC (2015), and Urbana, IL (2015). Using publicly available SoySNP50K genotypic data and the FA profiles from this study, a genome-wide association analysis was completed with a compressed mixed linear model to identify 43 genomic regions significantly associated with a fatty acid at a genome wide significance threshold of 5%. Among these regions, one and three novel genomic regions associated with palmitic acid and stearic acid, respectively, were identified across all five environments. Additionally, nine novel environment-specific FA-related genomic regions were discovered providing new insights into the genetics of soybean FAs. Previously reported FA-related loci, such as Supplementary Information: The online version contains supplementary material available at 10.1007/s11032-021-01216-1.

Indexed as

Fatty acidsGenome-wide association studyQuantitative trait lociSoybeanSoySNP50K

Identifiers

PMID37309353
PMCPMC10236115
OpenAlexW3138597532

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.