Evidence map›Paper›PMID 37308820›Full record

ArticleBMC genomics2023

Integrative multi-omics approach for identifying molecular signatures and pathways and deriving and validating molecular scores for COVID-19 severity and status.

Danika Lipman, Sandra E Safo, Thierry Chekouo

Abstract read
In one paragraph

Article in BMC genomics, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Plasma Proteins Associated with COVID-19 Severity in Puerto Rico.International journal of molecular sciences · 2024
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Danika LipmanDepartment of Mathematics and Statistics, University of Calgary, Calgary, Canada.
Sandra E SafoDivision of Biostatistics, School of Public Health, University of Minnesota, Minnesota, USA. ssafo@umn.edu.
Thierry ChekouoDepartment of Mathematics and Statistics, University of Calgary, Calgary, Canada. tchekouo@umn.edu.

Funding

Statistical and Machine Learning Methods to Address Biomedical Challenges for Integrating Multi-view Data (Supplement)R35GM142695 · NIGMS · UNIVERSITY OF MINNESOTA · PI Sandra E Safo · 2021 to 2026
$3.0M
NIGMS NIH HHS 1R35GM142695NIGMS NIH HHS R35 GM142695
6 · The paper itself

Abstract

backgroundThere is still more to learn about the pathobiology of COVID-19. A multi-omic approach offers a holistic view to better understand the mechanisms of COVID-19. We used state-of-the-art statistical learning methods to integrate genomics, metabolomics, proteomics, and lipidomics data obtained from 123 patients experiencing COVID-19 or COVID-19-like symptoms for the purpose of identifying molecular signatures and corresponding pathways associated with the disease.

resultsWe constructed and validated molecular scores and evaluated their utility beyond clinical factors known to impact disease status and severity. We identified inflammation- and immune response-related pathways, and other pathways, providing insights into possible consequences of the disease.

conclusionsThe molecular scores we derived were strongly associated with disease status and severity and can be used to identify individuals at a higher risk for developing severe disease. These findings have the potential to provide further, and needed, insights into why certain individuals develop worse outcomes.

Indexed as

COVID-19MultiomicsGenomicsHumansInflammationMetabolomicsCOVID-19Integrative analysisMulti-omicsPathway analysis

Identifiers

PMID37308820
PMCPMC10259816

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.