Evidence map›Paper›PMID 37308711›Full record

ArticleNature chemistry2023

Metal-dependent enzyme symmetry guides the biosynthetic flux of terpene precursors.

Felix Ecker, Abith Vattekkatte, Wilhelm Boland, Michael Groll

Open access · hybridAbstract read
In one paragraph

Article in Nature chemistry, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Review
  2. A diterpene synthase from the sandflyProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Felix EckerCenter for Protein Assemblies, Technical University of Munich, Garching, Germany.ORCID 0000-0002-8746-6676
Abith VattekkatteDepartment of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Jena, Germany.ORCID 0000-0002-5602-4015
Wilhelm BolandDepartment of Bioorganic Chemistry, Max Planck Institute for Chemical Ecology, Jena, Germany. boland@ice.mpg.de.ORCID 0000-0001-6784-2534
Michael GrollCenter for Protein Assemblies, Technical University of Munich, Garching, Germany. michael.groll@tum.de.ORCID 0000-0002-1660-340X
Max Planck Institute for Chemical Ecology · DETechnical University of Munich · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Terpenoids account for more than 60% of all natural products, and their carbon skeletons originate from common isoprenoid units of different lengths such as geranyl pyrophosphate and farnesyl pyrophosphate. Here we characterize a metal-dependent, bifunctional isoprenyl diphosphate synthase from the leaf beetle Phaedon cochleariae by structural and functional analyses. Inter- and intramolecular cooperative effects in the homodimer strongly depend on the provided metal ions and regulate the biosynthetic flux of terpene precursors to either biological defence or physiological development. Strikingly, a unique chain length determination domain adapts to form geranyl or farnesyl pyrophosphate by altering enzyme symmetry and ligand affinity between both subunits. In addition, we identify an allosteric geranyl-pyrophosphate-specific binding site that shares similarity with end-product inhibition in human farnesyl pyrophosphate synthase. Our combined findings elucidate a deeply intertwined reaction mechanism in the P. cochleariae isoprenyl diphosphate synthase that integrates substrate, product and metal-ion concentrations to harness its dynamic potential.

Indexed as

DiphosphatesTerpenesHumansPolyisoprenyl PhosphatesSesquiterpenesDiphosphatesfarnesyl pyrophosphategeranyl pyrophosphatePolyisoprenyl PhosphatesSesquiterpenesTerpenes

Identifiers

PMID37308711
PMCPMC10396970
OpenAlexW4380358871

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.