Evidence map›Paper›PMID 37308700›Full record

ArticleNature ecology & evolution2023

North African fox genomes show signatures of repeated introgression and adaptation to life in deserts.

Joana L Rocha, Pedro Silva, Nuno Santos, Mónia Nakamura, Sandra Afonso, Abdeljebbar Qninba, Zbyszek Boratynski, Peter H Sudmant, José C Brito, Rasmus Nielsen and 1 more

Open access · greenAbstract read
In one paragraph

Article in Nature ecology & evolution, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
15.0field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 42 citations in OpenAlex.

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  16. Dynamic interplay between niche variation and flight adaptability drove a hundred million years' dispersion in iconic lacewings.Proceedings of the National Academy of Sciences of the United States of America · 2025
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  19. Article
  20. The ecological function of thyroid hormones.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 6 countries.

Joana L RochaCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal. joana_rocha@berkeley.edu.ORCID http://orcid.org/0000-0003-3266-6328
Pedro SilvaCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0002-0362-7840
Nuno SantosCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0002-1676-107X
Mónia NakamuraCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0003-2493-2489
Sandra AfonsoCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0001-7212-991X
Abdeljebbar QninbaLaboratory of Geophysics and Natural Hazards, Geophysics, Natural Patrimony and Green Chemistry Research Center (GEOPAC), Institut Scientifique, Mohammed V University of Rabat, Rabat, Morocco.
Zbyszek BoratynskiCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.
Peter H SudmantDepartment of Integrative Biology and Department of Statistics, University of California Berkeley, Berkeley, CA, USA.ORCID http://orcid.org/0000-0002-9573-8248
José C BritoCIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal.ORCID http://orcid.org/0000-0001-5444-8132
Rasmus Nielsen *Department of Integrative Biology and Department of Statistics, University of California Berkeley, Berkeley, CA, USA. ras_nielsen@berkeley.edu.ORCID http://orcid.org/0000-0003-0513-6591
Raquel Godinho *CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, Vairão, Portugal. rgodinho@cibio.up.pt.ORCID http://orcid.org/0000-0002-4260-4799
Universidade do Porto · PTBerkeley College · USIT University of Copenhagen · DKMohammed V University · MAUniversity of California, Berkeley · US

Funding

The evolution and diversity of mutation, molecular fidelity, and genome structureR35GM142916 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Peter Heshedahl Sudmant · 2021 to 2026
$2.5M
Enabling Precision Genomics Using Adaptive VariationR01GM138634 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI NIELSEN, RASMUS · 2020 to 2023
$1.7M
NIGMS NIH HHS R01 GM138634NIGMS NIH HHS R35 GM142916NIH HHS R01GM138634
6 · The paper itself

Abstract

Elucidating the evolutionary process of animal adaptation to deserts is key to understanding adaptive responses to climate change. Here we generated 82 individual whole genomes of four fox species (genus Vulpes) inhabiting the Sahara Desert at different evolutionary times. We show that adaptation of new colonizing species to a hot arid environment has probably been facilitated by introgression and trans-species polymorphisms shared with older desert resident species, including a putatively adaptive 25 Mb genomic region. Scans for signatures of selection implicated genes affecting temperature perception, non-renal water loss and heat production in the recent adaptation of North African red foxes (Vulpes vulpes), after divergence from Eurasian populations approximately 78 thousand years ago. In the extreme desert specialists, Rueppell's fox (V. rueppellii) and fennec (V. zerda), we identified repeated signatures of selection in genes affecting renal water homeostasis supported by gene expression and physiological differences. Our study provides insights into the mechanisms and genetic underpinnings of a natural experiment of repeated adaptation to extreme conditions.

Indexed as

Adaptation, BiologicalBiological EvolutionFoxesAfrica, NorthernAnimalsDesert ClimateGenomicsHomeostasisWaterWater

Identifiers

PMID37308700
PMCPMC10527534
OpenAlexW4380319234

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.