Evidence map›Paper›PMID 37308689›Full record

ArticleScientific reports2023

Pirin is a prognostic marker of human melanoma that dampens the proliferation of malignant cells by downregulating JARID1B/KDM5B expression.

Cristina Penas, Yoana Arroyo-Berdugo, Aintzane Apraiz, Javier Rasero, Iraia Muñoa-Hoyos, Noelia Andollo, Goikoane Cancho-Galán, Rosa Izu, Jesús Gardeazabal, Pilar A Ezkurra and 6 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 7 institutions in 3 countries.

Cristina PenasDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Yoana Arroyo-BerdugoDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Aintzane ApraizDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Javier RaseroDepartment of Psychology, Carnegie Mellon University, Pittsburg, PA, 15213, USA.
Iraia Muñoa-HoyosDepartment of Physiology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Noelia AndolloDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Goikoane Cancho-GalánDepartment of Pathology, Basurto University Hospital, 48013, Bilbo, Spain.
Rosa IzuBiocruces Bizkaia Health Research Institute, 48903, Barakaldo, Spain.
Jesús GardeazabalBiocruces Bizkaia Health Research Institute, 48903, Barakaldo, Spain.
Pilar A EzkurraDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
Nerea SubiranBiocruces Bizkaia Health Research Institute, 48903, Barakaldo, Spain.
Carmen Alvarez-DominguezMEDONLINE Multidisciplinary Research Group, Faculty of Health Sciences and Faculty of Education, International University of La Rioja, 26006, Logroño, Spain.
Santos AlonsoBiocruces Bizkaia Health Research Institute, 48903, Barakaldo, Spain.
Anja K BosserhoffInstitute of Biochemistry, Friedrich-Alexander University of Erlangen-Nürnberg, 91054, Erlangen, Germany.
Aintzane AsumendiDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain.
María D BoyanoDepartment of Cell Biology and Histology, Faculty of Medicine and Nursing, UPV/EHU, 48940, Leioa, Spain. lola.boyano@ehu.eus.
University of the Basque Country · ESBioCruces Health research Institute · ESCarnegie Mellon University · USFriedrich-Alexander-Universität Erlangen-Nürnberg · DEHospital de Basurto · ESHospital de Cruces · ESUniversidad de La Rioja · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Originally considered to act as a transcriptional co-factor, Pirin has recently been reported to play a role in tumorigenesis and the malignant progression of many tumors. Here, we have analyzed the diagnostic and prognostic value of Pirin expression in the early stages of melanoma, and its role in the biology of melanocytic cells. Pirin expression was analyzed in a total of 314 melanoma biopsies, correlating this feature with the patient's clinical course. Moreover, PIR downregulated primary melanocytes were analyzed by RNA sequencing, and the data obtained were validated in human melanoma cell lines overexpressing PIR by functional assays. The immunohistochemistry multivariate analysis revealed that early melanomas with stronger Pirin expression were more than twice as likely to develop metastases during the follow-up. Transcriptome analysis of PIR downregulated melanocytes showed a dampening of genes involved in the G1/S transition, cell proliferation, and cell migration. In addition, an in silico approach predicted that JARID1B as a potential transcriptional regulator that lies between PIR and its downstream modulated genes, which was corroborated by co-transfection experiments and functional analysis. Together, the data obtained indicated that Pirin could be a useful marker for the metastatic progression of melanoma and that it participates in the proliferation of melanoma cells by regulating the slow-cycling JARID1B gene.

Indexed as

MelanomaBiopsyCell ProliferationHumansJumonji Domain-Containing Histone DemethylasesMelanocytesNuclear ProteinsPrognosisRepressor ProteinsTranscription FactorsJumonji Domain-Containing Histone DemethylasesKDM5B protein, humanNuclear ProteinsRepressor ProteinsTranscription Factors

Identifiers

PMID37308689
PMCPMC10260996
OpenAlexW4380355690

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.