Evidence map›Paper›PMID 37308586›Full record

ArticleNature biomedical engineering2023

Chromatin reprogramming and bone regeneration in vitro and in vivo via the microtopography-induced constriction of cell nuclei.

Xinlong Wang, Vasundhara Agrawal, Cody L Dunton, Yugang Liu, Ranya K A Virk, Priyam A Patel, Lucas Carter, Emily M Pujadas, Yue Li, Surbhi Jain and 15 more

Open access · greenAbstract read
In one paragraph

Article in Nature biomedical engineering, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
14.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 70 citations in OpenAlex.

  1. Article
  2. Review
  3. Mechanical regulation of cell memory.Nature structural & molecular biology · 2026
    Review
  4. Article
  5. Chromatin Packing Domain Engineering Through the Manipulation of Nuclear Cationic States.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Mechanomedicine.Nature reviews bioengineering · 2026
    Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 3 institutions in 3 countries.

Xinlong Wang *Department of Biomedical Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-8978-2851
Vasundhara Agrawal *Department of Biomedical Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0003-0913-9298
Cody L DuntonDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Yugang LiuDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0001-5304-3459
Ranya K A VirkDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Priyam A PatelQuantitative Data Science Core, Center for Genetic Medicine, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.ORCID 0000-0002-9433-5017
Lucas CarterDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Emily M PujadasDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0002-3520-835X
Yue LiDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Surbhi JainDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Hao WangMolecular Oncology Laboratory, Department of Orthopedic Surgery and Rehabilitation Medicine, The University of Chicago Medical Center, Chicago, IL, USA.
Na NiMolecular Oncology Laboratory, Department of Orthopedic Surgery and Rehabilitation Medicine, The University of Chicago Medical Center, Chicago, IL, USA.
Hsiu-Ming TsaiDepartment of Radiology, The University of Chicago, Chicago, IL, USA.
Nancy Rivera-BolanosDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Jane FrederickDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0003-3007-9197
Eric RothDepartment of Materials Sciences and Engineering, Northwestern University, Evanston, IL, USA.
Reiner BleherDepartment of Materials Sciences and Engineering, Northwestern University, Evanston, IL, USA.ORCID 0000-0003-0962-797X
Chongwen DuanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Panagiotis NtziachristosDepartment of Surgery, Feinberg School of Medicine, Northwestern University, Chicago, IL, USA.
Tong Chuan HeCenter for Advanced Regenerative Engineering, Northwestern University, Evanston, IL, USA.
Russell R ReidCenter for Advanced Regenerative Engineering, Northwestern University, Evanston, IL, USA.
Bin JiangDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Hariharan SubramanianDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA.
Vadim BackmanDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA. v-backman@northwestern.edu.ORCID 0000-0003-1981-1818
Guillermo A AmeerDepartment of Biomedical Engineering, Northwestern University, Evanston, IL, USA. g-ameer@northwestern.edu.ORCID 0000-0001-6023-048X
Northwestern University · USUniversity of Chicago Medical Center · USUniversity of Chicago · US

Funding

Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI O'HALLORAN, THOMAS V · 2015 to 2020
$10.4M
Technology Development UnitU54CA268084 · NCI · NORTHWESTERN UNIVERSITY · PI Vadim Backman, Daniela E Matei · 2022 to 2026
$10.0M
Reducing Cancer Transcriptional Heterogeneity through Regulation of Chromatin StructureR01CA228272 · NCI · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM, ROY, HEMANT K. · 2018 to 2022
$3.2M
Physical Genomics and Engineering Training ProgramT32GM142604 · NIGMS · NORTHWESTERN UNIVERSITY · PI BACKMAN, VADIM · 2021 to 2025
$1.9M
Exploring a new therapeutic approach through targeting epigenetic enzymes in ALLR00CA188293 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI NTZIACHRISTOS, PANAGIOTIS · 2015 to 2017
$747k
Therapeutic targeting of demethylation-deubiquitination axis in acute leukemiaR01CA248770 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI NTZIACHRISTOS, PANAGIOTIS · 2020 to 2021
$726k
NCI NIH HHS R00 CA188293NCI NIH HHS R01 CA228272NCI NIH HHS R01 CA248770NCI NIH HHS U54 CA193419NCI NIH HHS U54 CA268084NIGMS NIH HHS T32 GM142604
6 · The paper itself

Abstract

Topographical cues on cells can, through contact guidance, alter cellular plasticity and accelerate the regeneration of cultured tissue. Here we show how changes in the nuclear and cellular morphologies of human mesenchymal stromal cells induced by micropillar patterns via contact guidance influence the conformation of the cells' chromatin and their osteogenic differentiation in vitro and in vivo. The micropillars impacted nuclear architecture, lamin A/C multimerization and 3D chromatin conformation, and the ensuing transcriptional reprogramming enhanced the cells' responsiveness to osteogenic differentiation factors and decreased their plasticity and off-target differentiation. In mice with critical-size cranial defects, implants with micropillar patterns inducing nuclear constriction altered the cells' chromatin conformation and enhanced bone regeneration without the need for exogenous signalling molecules. Our findings suggest that medical device topographies could be designed to facilitate bone regeneration via chromatin reprogramming.

Indexed as

Mesenchymal Stem CellsOsteogenesisAnimalsBone RegenerationChromatinConstrictionHumansMiceChromatin

Identifiers

PMID37308586
PMCPMC10804399
OpenAlexW4380319168

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.