Evidence map›Paper›PMID 37307434›Full record

ArticleJournal of chemical information and modeling2023

Rapid Prediction of a Liquid Structure from a Single Molecular Configuration Using Deep Learning.

Chunhui Li, Benjamin Gilbert, Steven Farrell, Piotr Zarzycki

Open access · hybridAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Chunhui LiEnergy Geosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States.ORCID 0000-0002-8093-1600
Benjamin GilbertEnergy Geosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States.ORCID 0000-0003-0853-0826
Steven FarrellNERSC, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States.
Piotr ZarzyckiEnergy Geosciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Berkeley, California 94720, United States.ORCID 0000-0003-3891-7159
Lawrence Berkeley National Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Molecular dynamics simulation is an indispensable tool for understanding the collective behavior of atoms and molecules and the phases they form. Statistical mechanics provides accurate routes for predicting macroscopic properties as time-averages over visited molecular configurations - microstates. However, to obtain convergence, we need a sufficiently long record of visited microstates, which translates to the high-computational cost of the molecular simulations. In this work, we show how to use a point cloud-based deep learning strategy to rapidly predict the structural properties of liquids from a single molecular configuration. We tested our approach using three homogeneous liquids with progressively more complex entities and interactions: Ar, NO, and H

Indexed as

Deep LearningMolecular ConformationMolecular Dynamics SimulationNeural Networks, ComputerTemperature

Identifiers

PMID37307434
PMCPMC10302466
OpenAlexW4380355297

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.