Evidence map›Paper›PMID 37306860›Full record

ArticleArchives of virology2023

Full genotype characterization of Brazilian canine G3P[3] strains during a 10-year survey (2012-2021) of rotavirus infection in domestic dogs and cats.

Lais Sampaio Azevedo, Fernanda Faria Costa, Monique Beerens Abdul Ghani, Ellen Viana, Yasmin França, Roberta Salzone Medeiros, Raquel Guiducci, Simone Guadagnucci Morillo, Dieli Primo, Ricardo Duarte Lopes and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Lais Sampaio Azevedo *Enteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Fernanda Faria Costa *Provet Medicina Veterinária Diagnóstica, São Paulo, Brazil.
Monique Beerens Abdul GhaniAmigo Centro Médico Veterinário, São Paulo, Brazil.
Ellen VianaEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Yasmin FrançaEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Roberta Salzone MedeirosEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Raquel GuiducciEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Simone Guadagnucci MorilloEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Dieli PrimoEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil.
Ricardo Duarte LopesProvet Medicina Veterinária Diagnóstica, São Paulo, Brazil.
Michele Soares Gomes-GouvêaLaboratorio de Gastroenterologia e Hepatologia Tropical-LIM07, Departamento de Gastroenterologia, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.
Antonio Charlys da CostaLaboratorio de Parasitologia Médica-LIM46, Departamento de Doenças Infecciosas e Parasitárias, Instituto de Medicina Tropical, Faculdade de Medicina da Universidade de São Paulo, São Paulo, Brazil.
Adriana LuchsEnteric Diseases Laboratory, Virology Center, Adolfo Lutz Institute, São Paulo, Brazil. driluchs@gmail.com.ORCID http://orcid.org/0000-0003-4131-990X
Instituto Adolfo Lutz · BRHospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo · BRAssociação Brasileira de Oncologia Veterinária · BR

Funding

Fundação de Amparo à Pesquisa do Estado de São Paulo 2015/12944-9Fundação de Amparo à Pesquisa do Estado de São Paulo 2020/02469-0Fundação de Amparo à Pesquisa do Estado de São Paulo 2020/11182-6Fundação de Amparo à Pesquisa do Estado de São Paulo 2020/14786-0Fundo Especial de Saúde para Imunização em Massa e Controle de Doenças (FESIMA) 001/2021Fundo Especial de Saúde para Imunização em Massa e Controle de Doenças (FESIMA) 060/2021Laboratórios de Investigação Médica - Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo HCCOMVIDA scheme
6 · The paper itself

Abstract

There is a dearth of information on the molecular epidemiology of rotaviruses in pets in Brazil. The aim of this study was to monitor rotavirus infections in household dogs and cats, determine full-genotype constellations, and obtain data on evolutionary relationships. Between 2012 and 2021, 600 fecal samples from dogs and cats (516 and 84, respectively) were collected at small animal clinics in São Paulo state, Brazil. Rotavirus screening was conducted using ELISA, PAGE, RT-PCR, sequencing, and phylogenetic analysis. Rotavirus type A (RVA) was detected in 0.5% (3/600) of the animals. No non-RVA types were detected. The three canine RVA strains were found to have a novel genetic constellation, G3-P[3] -I2-R3-C2-M3-A9-N2-T3-E3-H6, which has never been reported in dogs. As expected, all of the viral genes, except those encoding NSP2 and VP7, were closely related to the corresponding genes from canine, feline, and canine-like-human RVA strains. A novel N2 (NSP2) lineage was identified, grouping together Brazilian canine, human, rat and bovine strains, suggesting that genetic reassortment had occurred. Uruguayan G3 strains obtained from sewage contained VP7 genes that were phylogenetically close to those of the Brazilian canine strains, which suggests that these strains are widely distributed in pet populations in South American countries. For the NSP2 (I2), NSP3 (T3), NSP4 (E3), NSP5 (H6), VP1 (R3), VP3 (M3), and VP6 (I2) segments, phylogenetic analysis revealed possibly new lineages. The epidemiological and genetic data presented here point out the necessity for collaborative efforts to implement the One Health strategy in the field of RVA research and to provide an updated understanding of RVA strains circulating canines in Brazil.

Indexed as

Cat DiseasesDog DiseasesRotavirusRotavirus InfectionsAnimalsBrazilCatsCattleDogsGenotypeHumansPhylogenyRats

Identifiers

PMID37306860
OpenAlexW4380290739

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.