Evidence map›Paper›PMID 37306301›Full record

ArticleeLife2023

Subfunctionalized expression drives evolutionary retention of ribosomal protein paralogs

Adele Francis Xu, Rut Molinuevo, Elisa Fazzari, Harrison Tom, Zijian Zhang, Julien Menendez, Kerriann M Casey, Davide Ruggero, Lindsay Hinck, Jonathan K Pritchard and 1 more

Open access · goldAbstract read
In one paragraph

Article in eLife, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Built differently or defective: can RNA exosomopathies cause ribosome heterogeneity?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  5. Ribosomal protein paralogues in ribosome specialization.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  6. Review
  7. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
    Review
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 1 country.

Adele Francis XuDepartment of Genetics, Stanford University, Stanford, United States.ORCID 0000-0003-3332-5285
Rut MolinuevoDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, Santa Cruz, United States.
Elisa FazzariHelen Diller Family Comprehensive Cancer Center, University of California, Los Angeles, Los Angeles, United States.
Harrison TomHelen Diller Family Comprehensive Cancer Center, University of California, Los Angeles, Los Angeles, United States.
Zijian ZhangDepartment of Chemical and Systems Biology, Stanford University, Stanford, United States.
Julien MenendezDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, Santa Cruz, United States.
Kerriann M CaseyDepartment of Biology, Stanford University, Stanford, United States.ORCID 0000-0003-4228-928X
Davide RuggeroDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, United States.ORCID 0000-0002-9444-5865
Lindsay HinckDepartment of Molecular, Cell, and Developmental Biology, University of California, Santa Cruz, Santa Cruz, United States.
Jonathan K PritchardDepartment of Genetics, Stanford University, Stanford, United States.ORCID 0000-0002-8828-5236
Maria BarnaDepartment of Genetics, Stanford University, Stanford, United States.ORCID 0000-0002-6843-4396
Stanford University · USUniversity of California, Santa Cruz · USStanford Medicine · USUniversity of California, Los Angeles · USUniversity of California, San Francisco · US

Funding

Integration of genetic association mapping and functional data to elucidate genetic mechanisms of diseaseR01HG008140 · NHGRI · STANFORD UNIVERSITY · PI JONATHAN K PRITCHARD · 2016 to 2026
$7.3M
Specialized Translational Control of Stem Cell Differentiation and Embryonic DevelopmentR01HD086634 · NICHD · STANFORD UNIVERSITY · PI BARNA, MARIA · 2016 to 2025
$5.5M
Notch/Robo Regulated Mechanisms Governing Cell Fate AcquisitionR01HD098722 · NICHD · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI HINCK, LINDSAY E · 2020 to 2024
$2.6M
A postdoctoral training program for impactful careers in stem cell biologyT32HD108079 · NICHD · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Bin Chen, CAMILLA FORSBERG · 2022 to 2026
$1.1M
CELL TYPE-SPECIFIC CONTROL of GENE EXPRESSION by RIBOSOMAL PROTEIN ISOFORMSF30HD100123 · NICHD · STANFORD UNIVERSITY · PI XU, ADELE FRANCIS · 2019 to 2023
$133k
NHGRI NIH HHS R01 HG008140NICHD NIH HHS F30 HD100123NICHD NIH HHS R01 HD086634NICHD NIH HHS R01 HD098722NICHD NIH HHS T32 HD108079NIH HHS 5R01HG008140NIH HHS F30HD100123NIH HHS R01HD086634NIH HHS R01HD098722
6 · The paper itself

Abstract

The formation of paralogs through gene duplication is a core evolutionary process. For paralogs that encode components of protein complexes such as the ribosome, a central question is whether they encode functionally distinct proteins or whether they exist to maintain appropriate total expression of equivalent proteins. Here, we systematically tested evolutionary models of paralog function using the ribosomal protein paralogs

Indexed as

Ribosomal ProteinsRibosomesAnimalsGenomeMammalsMiceVertebratesRibosomal Proteinsevolutionary biologygene duplicationgeneticsgenomicsmousemRNA translationribosomal proteins

Identifiers

PMID37306301
PMCPMC10313321
OpenAlexW4380290421

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.