Evidence map›Paper›PMID 37305994›Full record

ArticleCirculation. Heart failure2023

Comprehensive Transcriptomics Profiling of MicroRNA Reveals Plasma Circulating Biomarkers of Hypertrophic Cardiomyopathy and Dysregulated Signaling Pathways.

Lusha W Liang, Kohei Hasegawa, Mathew S Maurer, Muredach P Reilly, Michael A Fifer, Yuichi J Shimada

Open access · bronzeAbstract readMulticenter Study
In one paragraph

Article in Circulation. Heart failure, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Lusha W LiangDivision of Cardiology, Department of Medicine (L.W.L., M.S.M., M.P.R., Y.J.S.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0003-3931-4085
Kohei HasegawaDepartment of Emergency Medicine (K.H.), Massachusetts General Hospital, Harvard Medical School, Boston.ORCID 0000-0002-5739-7999
Mathew S MaurerDivision of Cardiology, Department of Medicine (L.W.L., M.S.M., M.P.R., Y.J.S.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-1867-0526
Muredach P ReillyDivision of Cardiology, Department of Medicine (L.W.L., M.S.M., M.P.R., Y.J.S.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-3035-9386
Michael A FiferCardiology Division, Department of Medicine (M.A.F., Y.J.S.), Massachusetts General Hospital, Harvard Medical School, Boston.ORCID 0000-0002-8363-445X
Yuichi J ShimadaDivision of Cardiology, Department of Medicine (L.W.L., M.S.M., M.P.R., Y.J.S.), Columbia University Irving Medical Center, New York, NY.ORCID 0000-0002-3494-307X
Columbia University Irving Medical Center · USMassachusetts General Hospital · US

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Proteomics profiling in hypertrophic cardiomyopathy and cardiac event predictionR01HL157216 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHIMADA, YUICHI · 2021 to 2025
$3.5M
Transcriptomics, pathobiology, and cardiac event in hypertrophic cardiomyopathyR01HL168382 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Yuichi Shimada · 2023 to 2026
$2.9M
Midcareer Mentoring Award for Patient Oriented Research in Geriatric CardiologyK24AG036778 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAURER, MATHEW S · 2010 to 2020
$1.6M
Mentored Patient Oriented Research in Cardiometabolic DiseaseK24HL107643 · NHLBI · UNIVERSITY OF PENNSYLVANIA · PI REILLY, MUREDACH P · 2011 to 2020
$1.4M
NCATS NIH HHS UL1 TR001873NHLBI NIH HHS K24 HL107643NHLBI NIH HHS R01 HL157216NHLBI NIH HHS R01 HL168382NIA NIH HHS K24 AG036778
6 · The paper itself

Abstract

backgroundHypertrophic cardiomyopathy (HCM) is caused by mutations in genes coding for proteins essential for myocardial contraction. However, it remains unclear through which signaling pathways these gene mutations mediate HCM pathogenesis. Growing evidence indicates that microRNAs (miRNAs) play an important role in the regulation of gene expression. We hypothesized that transcriptomics profiling of plasma miRNAs would reveal circulating biomarkers and dysregulated signaling pathways in HCM.

methodsWe conducted a multicenter case-control study of cases with HCM and controls with hypertensive left ventricular hypertrophy. We performed plasma transcriptomics profiling of miRNAs using RNA sequencing. We developed a transcriptomics-based discrimination model using samples retrieved during the first two-thirds of the study period at one institution (training set). We prospectively tested its discriminative ability in samples collected thereafter from the same institution (prospective test set). We also externally validated the model by applying it to samples collected from the other institutions (external test set). We executed pathway analysis of dysregulated miRNAs with univariable

resultsThis study included 555 patients (392 cases and 163 controls). One thousand one hundred forty-one miRNAs passed our quality control filters. The area under the receiver operating characteristic curve of the transcriptomics-based model derived from the training set was 0.86 (95% CI, 0.79-0.93) in the prospective test set and 0.94 (95% CI, 0.90-0.97) in the external test set. Pathway analysis revealed dysregulation of the Ras-MAPK (mitogen-activated protein kinase) pathway and pathways related to inflammation in HCM.

conclusionsThis study utilized comprehensive transcriptomics profiling with RNA sequencing in HCM, revealing circulating miRNA biomarkers and dysregulated pathways.

Indexed as

Cardiomyopathy, HypertrophicHeart FailureMicroRNAsBiomarkersCase-Control StudiesGene Expression ProfilingHumansProspective StudiesSignal TransductionTranscriptomeBiomarkersMicroRNAscardiomyopathy, hypertrophicgene expression profilinginflammationmicroRNAsmutation

Identifiers

PMID37305994
PMCPMC10293060
OpenAlexW4380258907

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.