Evidence map›Paper›PMID 37304876›Full record

ArticlePeerJ2023

Alterations in gene expressions of Caco-2 cell responses to LPS and ploy(I:C) stimulation.

Ge Qin, Yuanjie Zhao, Yating Gan, Xiaomei Yu, Yifan Zhao, Hui Peng, Shaoming Fang

Open access · goldAbstract read
In one paragraph

Article in PeerJ, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. Article
  3. Transcriptomic Analysis Reveals the Potential Mechanism ofInternational journal of molecular sciences · 2024
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Ge Qin *Fujian Agriculture and Forestry University, Fuzhou, China.
Yuanjie Zhao *Fujian Agriculture and Forestry University, Fuzhou, China.
Yating GanFujian Agriculture and Forestry University, Fuzhou, China.
Xiaomei YuFujian Agriculture and Forestry University, Fuzhou, China.
Yifan ZhaoFujian Agriculture and Forestry University, Fuzhou, China.
Hui PengHainan University, Haikou, China.
Shaoming FangFujian Agriculture and Forestry University, Fuzhou, China.
Fujian Agriculture and Forestry University · CNHainan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The intestinal epithelium barrier serves as a highly dynamic immunologic frontier in the defense against invading pathogenic bacteria and viruses. Hence, understanding of the complicated underlying relationship between enteric pathogens and the intestinal epithelium barrier is vital for developing strategies to improve the intestinal health of farm animals. To this end, Caco-2 cells were stimulated by 1 µg/ml lipopolysaccharide (LPS) for 24 h and 5 µg/ml polyinosinic-polycytidylic acid (ploy(I:C)) for 4 h to imitate bacterial and viral infection processes, respectively. The specific alterations in gene expression of Caco-2 cells after stimulation were characterized by transcriptome sequencing. Seventy differentially expressed genes (DEGs) were identified under LPS exposure, and 17 DEGs were observed under ploy(I:C) exposure. We found that most DEGs were specific, and only one common DEG

Indexed as

Animals, DomesticLipopolysaccharidesAnimalsAntigens, SurfaceAutophagyCaco-2 CellsGene ExpressionHumansAntigens, SurfaceLipopolysaccharidesSPAG7 protein, humanCaco-2Intestinal epithelium barrierLPSploy(I:C)qRT-PCRTranscriptome sequencing

Identifiers

PMID37304876
PMCPMC10257391
OpenAlexW4379795469

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.