Evidence map›Paper›PMID 37301965›Full record

ArticleJournal of neuroinflammation2023

Organotypic hippocampal culture model reveals differential responses to highly similar Zika virus isolates.

Marina da Silva Oliveira, Larissa Marcely Gomes Cassiano, Jeanne Pioline, Ketyllen Reis Andrade de Carvalho, Anna Christina de Matos Salim, Pedro Augusto Alves, Gabriel da Rocha Fernandes, Alexandre de Magalhães Vieira Machado, Roney Santos Coimbra

Open access · goldAbstract read
In one paragraph

Article in Journal of neuroinflammation, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Marina da Silva Oliveira *Neurogenômica, Imunopatologia, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Larissa Marcely Gomes Cassiano *Neurogenômica, Imunopatologia, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Jeanne PiolineNeurogenômica, Imunopatologia, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Ketyllen Reis Andrade de CarvalhoImunologia de Doenças Virais, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Anna Christina de Matos SalimPlataforma de Sequenciamento NGS (Next Generation Sequencing), Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Pedro Augusto AlvesImunologia de Doenças Virais, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Gabriel da Rocha FernandesPlataforma de Bioinformática, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Alexandre de Magalhães Vieira MachadoImunologia de Doenças Virais, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil.
Roney Santos CoimbraNeurogenômica, Imunopatologia, Instituto René Rachou, Fiocruz, Belo Horizonte, MG, Brazil. roney.coimbra@fiocruz.br.
Aix-Marseille Université · FRUniversidade Federal de Minas Gerais · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionZika virus (ZIKV) caused an outbreak in Brazil, in 2015, being associated to microcephaly. ZIKV has a strong neurotropism leading to death of infected cells in different brain regions, including the hippocampus, a major site for neurogenesis. The neuronal populations of the brain are affected differently by ZIKV from Asian and African ancestral lineages. However, it remains to be investigated whether subtle variations in the ZIKV genome can impact hippocampus infection dynamics and host response.

objectiveThis study evaluated how two Brazilian ZIKV isolates, PE243 and SPH2015, that differ in two specific missense amino acid substitutions, one in the NS1 protein and the other in the NS4A protein, affect the hippocampal phenotype and transcriptome.

methodsOrganotypic hippocampal cultures (OHC) from infant Wistar rats were infected with PE243 or SPH2015 and analyzed in time series using immunofluorescence, confocal microscopy, RNA-Seq and RT-qPCR.

resultsUnique patterns of infection and changes in neuronal density in the OHC were observed for PE243 and SPH2015 between 8 and 48 h post infection (p.i.). Phenotypic analysis of microglia indicated that SPH2015 has a greater capacity for immune evasion. Transcriptome analysis of OHC at 16 h p.i. disclosed 32 and 113 differentially expressed genes (DEGs) in response to infection with PE243 and SPH2015, respectively. Functional enrichment analysis suggested that infection with SPH2015 activates mostly astrocytes rather than microglia. PE243 downregulated biological process of proliferation of brain cells and upregulated those associated with neuron death, while SPH2015 downregulated processes related to neuronal development. Both isolates downregulated cognitive and behavioral development processes. Ten genes were similarly regulated by both isolates. They are putative biomarkers of early hippocampus response to ZIKV infection. At 5, 7, and 10 days p.i., neuronal density of infected OHC remained below controls, and mature neurons of infected OHC showed an increase in the epigenetic mark H3K4me3, which is associated to a transcriptionally active state. This feature is more prominent in response to SPH2015.

conclusionSubtle genetic diversity of the ZIKV affects the dynamics of viral dissemination in the hippocampus and host response in the early stages of infection, which may lead to different long-term effects in neuronal population.

Indexed as

Zika VirusZika Virus InfectionAnimalsBrainNeuronsRatsRats, WistarChromatin remodelingNeurodegenerationNeuroinflammationOrganotypic hippocampal cultureTranscriptomeZika virus

Identifiers

PMID37301965
PMCPMC10257278
OpenAlexW4380077754

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.