Evidence map›Paper›PMID 37300447›Full record

ArticleMutagenesis2023

Next Generation Sequencing Workshop at the Royal Society of Medicine (London, May 2022): how genomics is on the path to modernizing genetic toxicology.

Anthony M Lynch, Thalita B Zanoni, Jesse J Salk, Inigo Martincorena, Robert R Young, Jill Kucab, Charles C Valentine, Carole Yauk, Patricia A Escobar, Kristine L Witt and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Mutagenesis, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 6 citations in OpenAlex.

  1. Organoids for Genotoxicity Assessment.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 10 institutions in 4 countries.

Anthony M LynchGSK R&D, Stevenage, United Kingdom.ORCID 0000-0002-1533-7664
Thalita B ZanoniTwinStrand Biosciences, Seattle, WA, United States.ORCID 0009-0008-3023-9991
Jesse J SalkTwinStrand Biosciences, Seattle, WA, United States.ORCID 0000-0002-7804-0550
Inigo MartincorenaCancer, Ageing and Somatic Mutation Programme, Wellcome Sanger Institute, Hinxton, United Kingdom.ORCID 0000-0003-1122-4416
Robert R YoungTwinStrand Biosciences, Seattle, WA, United States.ORCID 0000-0002-3783-782X
Jill KucabGenetic and Environmental Toxicology, King's College, London, United Kingdom.ORCID 0000-0002-0341-4490
Charles C ValentineTwinStrand Biosciences, Seattle, WA, United States.ORCID 0000-0001-5630-7368
Carole YaukDepartment of Biology, University of Ottawa, Ottawa, ON, Canada.ORCID 0000-0002-6725-3454
Patricia A EscobarMerck & Co. InC., Rahway, NJ, United States.
Kristine L WittNational Institute of Environmental Health Sciences, Division of Translational Toxicology, Research Triangle Park, NC, United States.ORCID 0000-0002-3827-6884
Roland FrötschlFederal Institute for Drugs and Medical Devices (Bundesinstitiut für Arzneimittel und Medizinprodukte), Bonn, Germany.ORCID 0000-0001-8721-7509
Simon H ReedSchool of Medicine, Division of Cancer and Genetics, Cardiff University, Cardiff, CF14 4XN, United Kingdom.ORCID 0000-0002-4711-0560
Anne AshfordSafety Innovation, Safety Sciences, Clinical Pharmacology & Safety Sciences, R&D, AstraZeneca, Cambridge, United Kingdom.
Age UK · GBAstraZeneca (United Kingdom) · GBCardiff University · GBFederal Institute for Drugs and Medical Devices · DEKing's College London · GBMerck & Co., Inc., Rahway, NJ, USA (United States) · USTriangle · USUniversity of Ottawa · CAUniversity of Washington Medical Center · USWellcome Sanger Institute · GB

Funding

Development of a Genotoxicity Assay using Duplex SequencingR44ES030642 · NIEHS · TWINSTRAND BIOSCIENCES, INC. · PI SALK, JESSE J · 2019 to 2021
$1.7M
Cancer Research UK 21777NIEHS NIH HHS R44 ES030642
6 · The paper itself

Abstract

The use of error-corrected Next Generation Sequencing (ecNG) to determine mutagenicity has been a subject of growing interest and potentially a disruptive technology that could supplement, and in time, replace current testing paradigms in preclinical safety assessment. Considering this, a Next Generation Sequencing Workshop was held at the Royal Society of Medicine in London in May 2022, supported by the United Kingdom Environmental Mutagen Society (UKEMS) and TwinStrand Biosciences (WA, USA), to discuss progress and future applications of this technology. In this meeting report, the invited speakers provide an overview of the Workshop topics covered and identify future directions for research. In the area of somatic mutagenesis, several speakers reviewed recent progress made with correlating ecNGS to classic in vivo transgenic rodent mutation assays as well as exploring the use of this technology directly in humans and animals, and in complex organoid models. Additionally, ecNGS has been used for detecting off-target effects of gene editing tools and emerging data suggest ecNGS potential to measure clonal expansion of cells carrying mutations in cancer driver genes as an early marker of carcinogenic potential and for direct human biomonitoring. As such, the workshop demonstrated the importance of raising awareness and support for advancing the science of ecNGS for mutagenesis, gene editing, and carcinogenesis research. Furthermore, the potential of this new technology to contribute to advances in drug and product development and improve safety assessment was extensively explored.

Indexed as

High-Throughput Nucleotide SequencingMutagensAnimalsCarcinogenesisGenomicsHumansLondonMutagenesisMutationMutagens

Identifiers

PMID37300447
PMCPMC10687350
OpenAlexW4380204664

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.