Evidence map›Paper›PMID 37298504›Full record

ArticleInternational journal of molecular sciences2023

Molecular Dynamic Simulations Reveal the Activation Mechanisms of Oxidation-Induced TRPV1.

Yanyan Chu, Huanhuan Zhang, Mengke Yang, Rilei Yu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Classification of Protein Disulfide Bonds.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  3. Molecular dynamics simulation of thermal activation of human TRPV1.Molecular biology research communications · 2026
    Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Yanyan ChuMarine Biomedical Research Institute of Qingdao, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.ORCID 0000-0003-2486-050X
Huanhuan ZhangMarine Biomedical Research Institute of Qingdao, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.
Mengke YangMarine Biomedical Research Institute of Qingdao, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.
Rilei YuMarine Biomedical Research Institute of Qingdao, Ocean University of China, 5 Yushan Road, Qingdao 266003, China.ORCID 0000-0001-6625-2014
Marine Biomedical Research Institute of Qingdao · CNQingdao National Laboratory for Marine Science and Technology · CN

Funding

Shandong Province Major Science and Technology Innovation Project 2022CXGC020414the National Natural Science Foundation of China 32101017the Shandong Provincial Natural Science Foundation of China ZR2020MH405
6 · The paper itself

Abstract

Transient receptor potential vanilloid 1 (TRPV1), a non-selective cation channel, can be directly activated by oxidants through cysteine modification. However, the patterns of cysteine modification are unclear. Structural analysis showed that the free sulfhydryl groups of residue pairs C387 and C391 were potentially oxidized to form a disulfide bond, which is expected to be closely related to the redox sensing of TRPV1. To investigate if and how the redox states of C387 and C391 activate TRPV1, homology modeling and accelerated molecular dynamic simulations were performed. The simulation revealed the conformational transfer during the opening or closing of the channel. The formation of a disulfide bond between C387 and C391 leads to the motion of pre-S1, which further propagates conformational change to TRP, S6, and the pore helix from near to far. Residues D389, K426, E685-Q691, T642, and T671 contribute to the hydrogen bond transfer and play essential roles in the opening of the channel. The reduced TRPV1 was inactivated mainly by stabilizing the closed conformation. Our study elucidated the redox state of C387-C391 mediated long-range allostery of TRPV1, which provided new insights into the activation mechanism of TRPV1 and is crucial for making significant advances in the treatment of human diseases.

Indexed as

CysteineMolecular Dynamics SimulationDisulfidesHumansOxidation-ReductionProtein DomainsTRPV Cation ChannelsCysteineDisulfidesTRPV1 protein, humanTRPV Cation Channelsaccelerated molecular dynamicsallosteric mechanismdisulfide bondion channelTRPV1

Identifiers

PMID37298504
PMCPMC10253787
OpenAlexW4379055381

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.