Evidence map›Paper›PMID 37298500›Full record

ArticleInternational journal of molecular sciences2023

Secondary Structures of MERS-CoV, SARS-CoV, and SARS-CoV-2 Spike Proteins Revealed by Infrared Vibrational Spectroscopy.

Annalisa D'Arco, Marta Di Fabrizio, Tiziana Mancini, Rosanna Mosetti, Salvatore Macis, Giovanna Tranfo, Giancarlo Della Ventura, Augusto Marcelli, Massimo Petrarca, Stefano Lupi

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Annalisa D'ArcoLaboratori Nazionali Frascati, National Institute for Nuclear Physics (INFN-LNF), Via E. Fermi 54, 00044 Frascati, Italy.ORCID 0000-0001-7990-5117
Marta Di FabrizioLaboratory of Biological Electron Microscopy, School of Basic Sciences, Institute of Physics, EPFL & Department of Fundamental Microbiology, Faculty of Biology and Medicine, UNIL, 1015 Lausanne, Switzerland.ORCID 0000-0003-3812-5995
Tiziana ManciniDepartment of Physics, University of Rome 'La Sapienza', P.le A. Moro 2, 00185 Rome, Italy.ORCID 0000-0003-4399-3869
Rosanna MosettiDepartment of Physics, University of Rome 'La Sapienza', P.le A. Moro 2, 00185 Rome, Italy.ORCID 0000-0001-6768-3967
Salvatore MacisDepartment of Physics, University of Rome 'La Sapienza', P.le A. Moro 2, 00185 Rome, Italy.
Giovanna TranfoDepartment of Occupational and Environmental Medicine, Epidemiology and Hygiene, INAIL, Monte Porzio Catone, 00078 Rome, Italy.ORCID 0000-0001-8973-6046
Giancarlo Della VenturaLaboratori Nazionali Frascati, National Institute for Nuclear Physics (INFN-LNF), Via E. Fermi 54, 00044 Frascati, Italy.ORCID 0000-0001-6277-961X
Augusto MarcelliLaboratori Nazionali Frascati, National Institute for Nuclear Physics (INFN-LNF), Via E. Fermi 54, 00044 Frascati, Italy.ORCID 0000-0002-8138-7547
Massimo PetrarcaNational Institute for Nuclear Physics Section Rome1, P.le A. Moro 2, 00185 Rome, Italy.ORCID 0000-0001-9508-6801
Stefano LupiDepartment of Physics, University of Rome 'La Sapienza', P.le A. Moro 2, 00185 Rome, Italy.
Istituto Nazionale di Fisica Nucleare · ITSapienza University of Rome · ITÉcole Polytechnique Fédérale de Lausanne · CHIstituto Nazionale per l'Assicurazione Contro gli Infortuni sul Lavoro · ITRoma Tre University · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

All coronaviruses are characterized by spike glycoproteins whose S1 subunits contain the receptor binding domain (RBD). The RBD anchors the virus to the host cellular membrane to regulate the virus transmissibility and infectious process. Although the protein/receptor interaction mainly depends on the spike's conformation, particularly on its S1 unit, their secondary structures are poorly known. In this paper, the S1 conformation was investigated for MERS-CoV, SARS-CoV, and SARS-CoV-2 at serological pH by measuring their Amide I infrared absorption bands. The SARS-CoV-2 S1 secondary structure revealed a strong difference compared to those of MERS-CoV and SARS-CoV, with a significant presence of extended β-sheets. Furthermore, the conformation of the SARS-CoV-2 S1 showed a significant change by moving from serological pH to mild acidic and alkaline pH conditions. Both results suggest the capability of infrared spectroscopy to follow the secondary structure adaptation of the SARS-CoV-2 S1 to different environments.

Indexed as

COVID-19Middle East Respiratory Syndrome CoronavirusHumansSARS-CoV-2Spectrum AnalysisSpike Glycoprotein, CoronavirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ATR-IR spectroscopyconformationMERS-CoVSARS-CoVSARS-CoV-2secondary structurespike glycoproteins

Identifiers

PMID37298500
PMCPMC10253540
OpenAlexW4378902629

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.