Evidence map›Paper›PMID 37298280›Full record

ReviewInternational journal of molecular sciences2023

DNA Polymerases for Whole Genome Amplification: Considerations and Future Directions.

Carlos D Ordóñez, Modesto Redrejo-Rodríguez

Abstract readReview
In one paragraph

Review in International journal of molecular sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. The virome of bubaline (Bubalus bubalis) tonsils reveals an unreported bubaline polyomavirus.Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology] · 2024
    Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Special Issue on Whole Genome Amplification.International journal of molecular sciences · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Carlos D OrdóñezCIC bioGUNE, Bizkaia Science and Technology Park, Building 800, 48160 Derio, Spain.ORCID 0000-0001-7310-2292
Modesto Redrejo-RodríguezDepartment of Biochemistry, Universidad Autónoma de Madrid and Instituto de Investigaciones Biomédicas "Alberto Sols", CSIC-UAM, 28029 Madrid, Spain.ORCID 0000-0003-0014-4162

Funding

MCIN/AEI/10.13039/501100011033 and ERDF A way of making Europe PID2021-123403NB-I00
6 · The paper itself

Abstract

In the same way that specialized DNA polymerases (DNAPs) replicate cellular and viral genomes, only a handful of dedicated proteins from various natural origins as well as engineered versions are appropriate for competent exponential amplification of whole genomes and metagenomes (WGA). Different applications have led to the development of diverse protocols, based on various DNAPs. Isothermal WGA is currently widely used due to the high performance of Φ29 DNA polymerase, but PCR-based methods are also available and can provide competent amplification of certain samples. Replication fidelity and processivity must be considered when selecting a suitable enzyme for WGA. However, other properties, such as thermostability, capacity to couple replication, and double helix unwinding, or the ability to maintain DNA replication opposite to damaged bases, are also very relevant for some applications. In this review, we provide an overview of the different properties of DNAPs widely used in WGA and discuss their limitations and future research directions.

Indexed as

DNADNA-Directed DNA PolymeraseGenome, ViralNucleic Acid Amplification TechniquesPolymerase Chain ReactionDNADNA-Directed DNA PolymeraseBst DNA polymeraseDNA polymerasefidelitymultiple displacement amplificationPCRprocessivitytranslesion synthesiswhole genome amplificationΦ29 DNA polymerase

Identifiers

PMID37298280
PMCPMC10253169

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.