Evidence map›Paper›PMID 37293348›Full record

ArticleRadiology. Artificial intelligence2023

Systematic Analysis of Common Factors Impacting Deep Learning Model Generalizability in Liver Segmentation.

Brandon Konkel, Jacob Macdonald, Kyle Lafata, Islam H Zaki, Erol Bozdogan, Mohammad Chaudhry, Yuqi Wang, Gemini Janas, Walter F Wiggins, Mustafa R Bashir

Abstract read
In one paragraph

Article in Radiology. Artificial intelligence, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Brandon KonkelFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0002-4132-7232
Jacob MacdonaldFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0002-8463-7628
Kyle LafataFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0002-4513-6249
Islam H ZakiFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID https://orcid.org/0000-0001-7026-5686
Erol BozdoganFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).
Mohammad ChaudhryFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0003-0640-6282
Yuqi WangFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0002-8008-7294
Gemini JanasFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).
Walter F WigginsFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0002-0258-2708
Mustafa R BashirFrom the Department of Radiology (B.K., J.M., K.L., I.H.Z., E.B., M.C., G.J., W.F.W., M.R.B.), Department of Radiation Oncology (K.L.), and Department of Medicine, Division of Gastroenterology (M.R.B.), Duke University School of Medicine, Duke University Medical Center, Box 3808, Durham, NC 27710; Department of Electrical & Computer Engineering, Duke University Pratt School of Engineering, Durham, NC (K.L., Y.W.); Department of Radiology, Faculty of Medicine, Benha University, Benha, Egypt (I.H.Z.); Department of Radiology, College of Medicine-Tucson, University of Arizona, Tucson, AZ (E.B.); and Department of Radiology, Rutgers Health-Newark Beth Israel Medical Center, Newark, NJ (M.C.).ORCID 0000-0001-8800-5057

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: To investigate the effect of training data type on generalizability of deep learning liver segmentation models. Materials and Methods: This Health Insurance Portability and Accountability Act-compliant retrospective study included 860 MRI and CT abdominal scans obtained between February 2013 and March 2018 and 210 volumes from public datasets. Five single-source models were trained on 100 scans each of T1-weighted fat-suppressed portal venous (dynportal), T1-weighted fat-suppressed precontrast (dynpre), proton density opposed-phase (opposed), single-shot fast spin-echo (ssfse), and T1-weighted non-fat-suppressed (t1nfs) sequence types. A sixth multisource (DeepAll) model was trained on 100 scans consisting of 20 randomly selected scans from each of the five source domains. All models were tested against 18 target domains from unseen vendors, MRI types, and modality (CT). The Dice-Sørensen coefficient (DSC) was used to quantify similarity between manual and model segmentations. Results: Single-source model performance did not degrade significantly against unseen vendor data. Models trained on T1-weighted dynamic data generally performed well on other T1-weighted dynamic data (DSC = 0.848 ± 0.183 [SD]). The opposed model generalized moderately well to all unseen MRI types (DSC = 0.703 ± 0.229). The ssfse model failed to generalize well to any other MRI type (DSC = 0.089 ± 0.153). Dynamic and opposed models generalized moderately well to CT data (DSC = 0.744 ± 0.206), whereas other single-source models performed poorly (DSC = 0.181 ± 0.192). The DeepAll model generalized well across vendor, modality, and MRI type and against externally sourced data. Conclusion: Domain shift in liver segmentation appears to be tied to variations in soft-tissue contrast and can be effectively bridged with diversification of soft-tissue representation in training data.

Indexed as

Convolutional Neural Network (CNN)CTDeep Learning AlgorithmsLiver SegmentationMachine Learning AlgorithmsMRISupervised Learning

Identifiers

PMID37293348
PMCPMC10245179

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