Evidence map›Paper›PMID 37292757›Full record

ArticlebioRxiv : the preprint server for biology2023

Changes in Active Site Loop Conformation Relate to the Transition toward a Novel Enzymatic Activity.

Pauline Jacquet, Raphaël Billot, Amir Shimon, Nathan Hoekstra, Céline Bergonzi, Anthony Jenks, Eric Chabrière, David Daudé, Mikael H Elias

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Pauline JacquetGene&GreenTK, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Raphaël BillotGene&GreenTK, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Amir ShimonUniversity of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics & Biotechnology Institute, St. Paul, MN, 55108, USA.
Nathan HoekstraUniversity of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics & Biotechnology Institute, St. Paul, MN, 55108, USA.
Céline BergonziUniversity of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics & Biotechnology Institute, St. Paul, MN, 55108, USA.
Anthony JenksUniversity of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics & Biotechnology Institute, St. Paul, MN, 55108, USA.
Eric ChabrièreGene&GreenTK, 19-21 Bd Jean Moulin, 13005, Marseille, France.
David DaudéGene&GreenTK, 19-21 Bd Jean Moulin, 13005, Marseille, France.
Mikael H EliasUniversity of Minnesota, Department of Biochemistry, Molecular Biology and Biophysics & Biotechnology Institute, St. Paul, MN, 55108, USA.

Funding

Unravelling the Importance of Bacterial Signaling using Specific Interference StrategiesR35GM133487 · NIGMS · UNIVERSITY OF MINNESOTA · PI Mikael H Elias · 2019 to 2026
$2.7M
NIGMS NIH HHS R35 GM133487
6 · The paper itself

Abstract

Enzymatic promiscuity, the ability of enzymes to catalyze multiple, distinct chemical reactions, has been well documented and is hypothesized to be a major driver for the emergence of new enzymatic functions. Yet, the molecular mechanisms involved in the transition from one activity to another remain debated and elusive. Here, we evaluated the redesign of the active site binding cleft of the lactonase

Indexed as

conformational directionalityconformational dynamicsenzymatic promiscuitylactonasephosphotriesterase

Identifiers

PMID37292757
PMCPMC10245850

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.