Evidence map›Paper›PMID 37292670›Full record

ArticlebioRxiv : the preprint server for biology2023

Energy Guided Diffusion for Generating Neurally Exciting Images.

Paweł A Pierzchlewicz, Konstantin F Willeke, Arne F Nix, Pavithra Elumalai, Kelli Restivo, Tori Shinn, Cate Nealley, Gabrielle Rodriguez, Saumil Patel, Katrin Franke and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Paweł A PierzchlewiczInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.
Konstantin F WillekeInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.
Arne F NixInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.
Pavithra ElumalaiInstitute of Computer Science and Campus Institute Data Science, University of Göttingen, Germany.
Kelli RestivoDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Tori ShinnDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Cate NealleyDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Gabrielle RodriguezDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Saumil PatelDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Katrin FrankeDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Andreas S ToliasDepartment of Neuroscience, Baylor College of Medicine, Houston, TX, USA.
Fabian H SinzInstitute for Bioinformatics and Medical Informatics, Tübingen University, Tübingen, Germany.

Funding

Generation of novel cell type specific mouse genetic toolsU19MH114830 · NIMH · ALLEN INSTITUTE · PI ZENG, HONGKUI · 2017 to 2021
$64.7M
VISION RESEARCH CENTERP30EY002520 · NEI · BAYLOR COLLEGE OF MEDICINE · PI Samuel M Wu · 1985 to 2026
$14.8M
Probabilistic coding in cortical populationsR01EY026927 · NEI · BAYLOR COLLEGE OF MEDICINE · PI MA, WEI JI, TOLIAS, ANDREAS · 2017 to 2021
$1.9M
NEI NIH HHS P30 EY002520NEI NIH HHS R01 EY026927NIMH NIH HHS U19 MH114830
6 · The paper itself

Abstract

In recent years, most exciting inputs (MEIs) synthesized from encoding models of neuronal activity have become an established method to study tuning properties of biological and artificial visual systems. However, as we move up the visual hierarchy, the complexity of neuronal computations increases. Consequently, it becomes more challenging to model neuronal activity, requiring more complex models. In this study, we introduce a new attention readout for a convolutional data-driven core for neurons in macaque V4 that outperforms the state-of-the-art task-driven ResNet model in predicting neuronal responses. However, as the predictive network becomes deeper and more complex, synthesizing MEIs via straightforward gradient ascent (GA) can struggle to produce qualitatively good results and overfit to idiosyncrasies of a more complex model, potentially decreasing the MEI's model-to-brain transferability. To solve this problem, we propose a diffusion-based method for generating MEIs via Energy Guidance (EGG). We show that for models of macaque V4, EGG generates single neuron MEIs that generalize better across architectures than the state-of-the-art GA while preserving the within-architectures activation and requiring 4.7x less compute time. Furthermore, EGG diffusion can be used to generate other neurally exciting images, like most exciting natural images that are on par with a selection of highly activating natural images, or image reconstructions that generalize better across architectures. Finally, EGG is simple to implement, requires no retraining of the diffusion model, and can easily be generalized to provide other characterizations of the visual system, such as invariances. Thus EGG provides a general and flexible framework to study coding properties of the visual system in the context of natural images.

Identifiers

PMID37292670
PMCPMC10245650

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.