Evidence map›Paper›PMID 37292649›Full record

ArticlemedRxiv : the preprint server for health sciences2023

Association of neurotransmitter pathway polygenic risk with specific symptom profiles in psychosis.

Tracy L Warren, Justin D Tubbs, Tyler A Lesh, Mylena B Corona, Sarvenaz Pakzad, Marina Albuquerque, Praveena Singh, Vanessa Zarubin, Sarah Morse, Pak Chung Sham and 2 more

Open access · greenAbstract readPreprint
In one paragraph

Article in medRxiv : the preprint server for health sciences, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 4 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Tracy L WarrenUC Davis Center for Neuroscience.ORCID 0000-0001-5125-0868
Justin D TubbsDepartment of Psychiatry, The University of Hong Kong.ORCID 0000-0002-6671-6816
Tyler A LeshUC Davis Imaging Research Center.ORCID 0000-0002-6160-3927
Mylena B CoronaUC Davis Center for Neuroscience.
Sarvenaz PakzadUC Davis Imaging Research Center.
Marina AlbuquerqueUC Davis Imaging Research Center.
Praveena SinghUC Davis Imaging Research Center.
Vanessa ZarubinUC Davis Imaging Research Center.
Sarah MorseWashington University in St. Louis.
Pak Chung ShamDepartment of Psychiatry, The University of Hong Kong.ORCID 0000-0002-2533-7270
Cameron S CarterUC Davis Imaging Research Center.
Alex S NordUC Davis Center for Neuroscience.ORCID 0000-0003-4259-7514
University of California, Davis · USCenter for Neurosciences · USChinese University of Hong Kong · HKHarvard University · USWashington University in St. Louis · US

Funding

PATHOPHYSIOLOGY OF COGNITIVE DISABILITY IN SCHIZOPHRENIAR01MH059883 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CARTER, CAMERON S. · 2000 to 2017
$6.1M
Functional Elucidation of the Sequence-Encoded Regulatory Activity of Enhancers in Vivo in the BrainR35GM119831 · NIGMS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Alexander Nord · 2016 to 2026
$3.9M
Learning, Memory, and Plasticity (LaMP) Training ProgramT32MH112507 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI Karen Zito · 2017 to 2026
$2.4M
UC Davis Advancing Diversity in the Neuroscience Research (ADNR) ProgramR25NS112130 · NINDS · UNIVERSITY OF CALIFORNIA AT DAVIS · PI USREY, W MARTIN · 2019 to 2023
$1.2M
Identifying enhancers in schizophrenia and bipolar disorder-associated noncoding eQTLs during cortical synaptic organizationF31MH129135 · NIMH · UNIVERSITY OF CALIFORNIA AT DAVIS · PI WARREN, TRACY LEIGH · 2022 to 2024
$100k
NIGMS NIH HHS R35 GM119831NIMH NIH HHS F31 MH129135NIMH NIH HHS R01 MH059883NIMH NIH HHS T32 MH112507NINDS NIH HHS R25 NS112130
6 · The paper itself

Abstract

A primary goal of psychiatry is to better understand the pathways that link genetic risk to psychiatric symptoms. Here, we tested association of diagnosis and endophenotypes with overall and neurotransmitter pathway-specific polygenic risk in patients with early-stage psychosis. Subjects included 206 demographically diverse cases with a psychotic disorder who underwent comprehensive psychiatric and neurological phenotyping and 115 matched controls. Following genotyping, we calculated polygenic scores (PGSs) for schizophrenia (SZ) and bipolar disorder (BP) using Psychiatric Genomics Consortium GWAS summary statistics. To test if overall genetic risk can be partitioned into affected neurotransmitter pathways, we calculated pathway PGSs (pPGSs) for SZ risk affecting each of four major neurotransmitter systems: glutamate, GABA, dopamine, and serotonin. Psychosis subjects had elevated SZ PGS versus controls; cases with SZ or BP diagnoses had stronger SZ or BP risk, respectively. There was no significant association within psychosis cases between individual symptom measures and overall PGS. However, neurotransmitter-specific pPGSs were moderately associated with specific endophenotypes; notably, glutamate was associated with SZ diagnosis and with deficits in cognitive control during task-based fMRI, while dopamine was associated with global functioning. Finally, unbiased endophenotype-driven clustering identified three diagnostically mixed case groups that separated on primary deficits of positive symptoms, negative symptoms, global functioning, and cognitive control. All clusters showed strong genome-wide risk. Cluster 2, characterized by deficits in cognitive control and negative symptoms, additionally showed specific risk concentrated in glutamatergic and GABAergic pathways. Due to the intensive characterization of our subjects, the present study was limited to a relatively small cohort. As such, results should be followed up with additional research at the population and mechanism level. Our study suggests pathway-based PGS analysis may be a powerful path forward to study genetic mechanisms driving psychiatric endophenotypes.

Identifiers

PMID37292649
PMCPMC10246134
OpenAlexW4378610481

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.