Evidence map›Paper›PMID 37292478›Full record

ArticleArXiv2023

Looking forwards and backwards: dynamics and genealogies of locally regulated populations.

Alison M Etheridge, Ian Letter, Thomas G Kurtz, Peter L Ralph, Terence Tsui Ho Lung

Abstract readPreprint
In one paragraph

Article in ArXiv, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Alison M EtheridgeDepartment of Statistics, Oxford University, 24-29 St Giles, Oxford OX1 3LB, UK.
Ian LetterDepartment of Statistics, Oxford University, 24-29 St Giles, Oxford OX1 3LB, UK.
Thomas G KurtzDepartments of Mathematics and Statistics, University of Wisconsin - Madison, 480 Lincoln Drive, Madison, WI 53706-1388, USA.
Peter L RalphDepartments of Mathematics and Biology, University of Oregon, Fenton Hall, Eugene, OR 97403-1222, USA.
Terence Tsui Ho LungDepartment of Statistics, Oxford University, 24-29 St Giles, Oxford OX1 3LB, UK.

Funding

Scaling up computational genomics with tree sequencesR01HG012473 · NHGRI · UNIVERSITY OF OREGON · PI PETER Lochhead RALPH · 2023 to 2026
$2.3M
Scaling up computational genomics with tree sequencesR56HG011395 · NHGRI · UNIVERSITY OF OREGON · PI RALPH, PETER LOCHHEAD · 2021 to 2021
$557k
NHGRI NIH HHS R01 HG012473NHGRI NIH HHS R56 HG011395
6 · The paper itself

Abstract

We introduce a broad class of mechanistic spatial models to describe how spatially heterogeneous populations live, die, and reproduce. Individuals are represented by points of a point measure, whose birth and death rates can depend both on spatial position and local population density, defined at a location to be the convolution of the point measure with a suitable non-negative integrable kernel centred on that location. We pass to three different scaling limits: an interacting superprocess, a nonlocal partial differential equation (PDE), and a classical PDE. The classical PDE is obtained both by a two-step convergence argument, in which we first scale time and population size and pass to the nonlocal PDE, and then scale the kernel that determines local population density; and in the important special case in which the limit is a reaction-diffusion equation, directly by simultaneously scaling the kernel width, timescale and population size in our individual based model. A novelty of our model is that we explicitly model a juvenile phase. The number of juveniles produced by an individual depends on local population density at the location of the parent; these juvenile offspring are thrown off in a (possibly heterogeneous, anisotropic) Gaussian distribution around the location of the parent; they then reach (instant) maturity with a probability that can depend on the local population density at the location at which they land. Although we only record mature individuals, a trace of this two-step description remains in our population models, resulting in novel limits in which the spatial dynamics are governed by a nonlinear diffusion. Using a lookdown representation, we are able to retain information about genealogies relating individuals in our population and, in the case of deterministic limiting models, we use this to deduce the backwards in time motion of the ancestral lineage of an individual sampled from the population. We observe that knowing the history of the population density is not enough to determine the motion of ancestral lineages in our model. We also investigate (and contrast) the behaviour of lineages for three different deterministic models of a population expanding its range as a travelling wave: the Fisher-KPP equation, the Allen-Cahn equation, and a porous medium equation with logistic growth.

Indexed as

Fisher-KPP equationgenealogiesinteracting superprocesslookdown constructionpopulation modelporous medium equationreaction-diffusion equationtravelling waves

Identifiers

PMID37292478
PMCPMC10246084

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.