Evidence map›Paper›PMID 37291425›Full record

ArticleCommunications biology2023

Targeted and whole-genome sequencing reveal a north-south divide in P. falciparum drug resistance markers and genetic structure in Mozambique.

Clemente da Silva, Simone Boene, Debayan Datta, Eduard Rovira-Vallbona, Andrés Aranda-Díaz, Pau Cisteró, Nicholas Hathaway, Sofonias Tessema, Arlindo Chidimatembue, Glória Matambisso and 19 more

Abstract read
In one paragraph

Article in Communications biology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Mapping Antimalarial Drug Resistance in Mozambique: A Systematic Review ofInternational journal of molecular sciences · 2024
    Pooled it
  3. Trial
  4. Article
  5. Prevalence ofPathogens (Basel, Switzerland) · 2026
    Article
  6. Article
  7. A NovelmedRxiv : the preprint server for health sciences · 2025
    Article
  8. Article
  9. Sensitive and modular amplicon sequencing ofbioRxiv : the preprint server for biology · 2025
    Article
  10. Article
  11. Geo-classification of drug-resistant travel-associatedAntimicrobial agents and chemotherapy · 2024
    Article
  12. BMJ open · 2024
    Observational
  13. Review
  14. Article
  15. Analysis of Mutations inInfection and drug resistance · 2024
    Article
  16. Article
  17. Sampling for malaria molecular surveillance.Trends in parasitology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Clemente da Silva *Centro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Simone Boene *Centro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.ORCID 0000-0002-8323-9863
Debayan DattaISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Eduard Rovira-VallbonaISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.
Andrés Aranda-DíazEPPIcenter Research Program, Division of HIV, ID, and Global Medicine, Department of Medicine, University of California, San Francisco, CA, USA.
Pau CisteróISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.ORCID 0000-0001-7225-4331
Nicholas HathawayUniversity of Massachusetts Chan Medical School, Worcester, MA, USA.
Sofonias TessemaEPPIcenter Research Program, Division of HIV, ID, and Global Medicine, Department of Medicine, University of California, San Francisco, CA, USA.
Arlindo ChidimatembueCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Glória MatambissoCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Abel NhamaCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.ORCID 0000-0002-8636-5275
Eusebio MaceteCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Arnau PujolISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.ORCID 0000-0001-7288-6435
Lidia NhamussuaCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Beatriz GalatasCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Caterina GuinovartISGlobal, Hospital Clínic - Universitat de Barcelona, Barcelona, Spain.ORCID 0000-0003-0504-4486
Sónia EnosseInstituto Nacional de Saúde (INS), Ministério da Saúde, Maputo, Mozambique.
Eva De CarvalhoWorld Health Organization, WHO Country Office Maputo, Maputo, Mozambique.
Eric RogierMalaria Branch, Division of Parasitic Diseases and Malaria, United States Centers for Disease Control and Prevention, Atlanta, GA, USA.ORCID 0000-0001-7375-8304
Mateusz M PlucinskiUnited States President's Malaria Initiative, Malaria Branch, Division of Parasitic Diseases and Malaria, United States Centers for Disease Control and Prevention, Atlanta, GA, USA.
James ColbornClinton Health Access Initiative, Maputo, Mozambique.
Rose ZulligerU.S. President's Malaria Initiative, USAID, Washington, DC, USA.
Abuchahama SaifodineU.S. President's Malaria Initiative, USAID, Maputo, Mozambique.
Pedro L AlonsoCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Baltazar CandrinhoNational Malaria Control Programme, Ministry of Health, Maputo, Mozambique.
Bryan GreenhouseEPPIcenter Research Program, Division of HIV, ID, and Global Medicine, Department of Medicine, University of California, San Francisco, CA, USA.ORCID 0000-0003-0287-9111
Pedro AideCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.ORCID 0000-0002-2379-6529
Francisco SauteCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique.
Alfredo MayorCentro de Investigação em Saúde de Manhiça (CISM), Maputo, Mozambique. alfredo.mayor@isglobal.org.ORCID 0000-0003-3890-2897

Funding

Mentoring translational scientists in international infectious disease researchK24AI144048 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Bryan R Greenhouse · 2019 to 2026
$1.6M
Pregnant women as a sentinel group for malaria surveillance in an era of changing malaria transmission (MiPMoz)R01AI123050 · NIAID · FUNDACAO MANHICA · PI MACETE, EUSEBIO, MAYOR, ALFREDO · 2016 to 2020
$669k
NIAID NIH HHS K24 AI144048NIAID NIH HHS R01 AI123050World Health Organization 001
6 · The paper itself

Abstract

Mozambique is one of the four African countries which account for over half of all malaria deaths worldwide, yet little is known about the parasite genetic structure in that country. We performed P. falciparum amplicon and whole genome sequencing on 2251 malaria-infected blood samples collected in 2015 and 2018 in seven provinces of Mozambique to genotype antimalarial resistance markers and interrogate parasite population structure using genome-wide microhaplotyes. Here we show that the only resistance-associated markers observed at frequencies above 5% were pfmdr1-184F (59%), pfdhfr-51I/59 R/108 N (99%) and pfdhps-437G/540E (89%). The frequency of pfdhfr/pfdhps quintuple mutants associated with sulfadoxine-pyrimethamine resistance increased from 80% in 2015 to 89% in 2018 (p < 0.001), with a lower expected heterozygosity and higher relatedness of microhaplotypes surrounding pfdhps mutants than wild-type parasites suggestive of recent selection. pfdhfr/pfdhps quintuple mutants also increased from 72% in the north to 95% in the south (2018; p < 0.001). This resistance gradient was accompanied by a concentration of mutations at pfdhps-436 (17%) in the north, a south-to-north increase in the genetic complexity of P. falciparum infections (p = 0.001) and a microhaplotype signature of regional differentiation. The parasite population structure identified here offers insights to guide antimalarial interventions and epidemiological surveys.

Indexed as

AntimalarialsMalariaMalaria, FalciparumDrug ResistanceGenetic StructuresHumansMozambiquePlasmodium falciparumWhole Genome SequencingAntimalarials

Identifiers

PMID37291425
PMCPMC10250372

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.